Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06440 370 / 1e-121 unknown protein AT3G11720 322 / 4e-102 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013601 [exp] 1165 / 0 AT5G06440 370 / 2e-121 unknown protein Lus10029362 [exp] 539 / 0 AT5G06440 348 / 3e-117 unknown protein Lus10029361 [exp] 376 / 1e-122 AT5G06440 331 / 8e-108 unknown protein Lus10016186 [exp] 357 / 9e-116 AT5G06440 306 / 1e-98 unknown protein Lus10016185 [exp] 194 / 2e-57 AT3G11720 136 / 1e-37 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201000 [exp] 450 / 1e-149 AT5G06440 390 / 6e-129 unknown protein Potri.016G067000 [exp] 442 / 2e-145 AT5G06440 370 / 6e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021251 pacid=23178203 polypeptide=Lus10021251 locus=Lus10021251.g ID=Lus10021251.BGIv1.0 annot-version=v1.0 ATGGGGGATAAGAAAGGCGAAATTTTCCAGTATAGAGCAAGGCTGGACAAGTCATTGGCATCTCCTGAACTGACAAATCATGCAACCCTTAAAGGGCTTG TCAGGGATCAAATGCTACAGTCTAGACTCGATGAAAATGAAGAATGTAGTGAGGATCTGCTGGACAAACGAACCGGGGATGTGTCCAACTTTCTTGACAT GTTGAGGAGTGCCTCAGATAATGGGAGTGAGCCATCCAAAACCAATGAGCCACCCTCTGGTGATTGGAAAGTTAAAGAAAGTAACCGTGAGTACCGTGTT ATGTACCGTCCAGGACTTCAGGGAACCCCGTTTCATACTCTACTGGTGGAAGGCTACGTAGATGGGCCAGTCGATGCATGTTTATGCATCGGCTGGGAGT CAACGCTGTACAGGAAATGGTGGCCACAGATCATTATGCCTCCTTTCAGGATTATTGTGTGTAAATGCTTGAAAAGGATCCGTATCGGAGAGCAGATATC TTTAGTCAGGGTGAAGGTTAGTTGGCCATTACAAGCTAGGGAGGTTGTAATTCACTATGTTTTATTCGAGTACATCGAGGAGGGGATAAGTATTGTTCTT TTGAATACGATCCCTGGTTTGGATACCATTGATATAAATACCCACGGGTATACCAAGGACGGAATACCTGAAGCTGAGGACGTAGTAAGAGCTGATTTGG TGGGTGGCTTTGCTTTGCAAAAGGTTTCCTCAACGAGAAGTTACTTTCGAACTATTGCTACCGTGGACCTTAAGCTGGATTTTGTTCCTCCAGCCCTCAT AAATTTTATCTCAAGACAACTAATTGGAAGTGGTTTCAAACTTTATCAGAAGGTAGTGACTGGCTTAGGTAAGAACGATGATGAAGAATATGTCCAGGCA CTGGCAGATCCTTTCTATGTTAAAAAACGAGAGGCGATCTATGCTACCGATGTAAAACATAAGATGAAGGAAGGGAAAGGCTCACCGGACAGCATTAGCC TTCCACAACGTGATCGTTCCATCACTCTTGGGGAGCGAAGCTCAGAGGAGAAGAAAGGAAATACTGATGAAGATGATGTAGATGCAGAAAGATTGATAAC TGAACAAAAGAAGGAAGTAAATGAGATTGAAGAATGTGAGAGTGAAGGAATTGAAGTCCTGGTGGATGAAGTTGAAATCAAAAGAGCTGAACATAAAGAT GAAAAGAATGGTATTGCTGGTGGAATTCTGCTAGATGATGGCTCACTGGTTGCAGAGATGTATAGTAGTTCTGATGAGATTTCGGAGGATGGCGATGAAG ATATAGGTCAACCATCTGCCTCAACCATCAGAATTGCAGAAAAGGGTTCTGTGAAGTCTGAAAAGAATGTTGCCATAAATCCTGAGGTGAAACGTGCGTT AGAAACTTTAGAAAAGGCCATCTTTATGGTCCGGAATTCGAAACCCAATGCTCTAGAGAGGCCACTCCCTACTGCAGTTGATGAAGAGACCTCCAATGGT GCAGAAAAGGATTCCAGTCCTGTGAAAGACAACAATGATAGGAAGCGTCAGAATGCAAATGATGTTCCTCCTGAAGCTCCAGCCAGAAATGTAAGACTCA CGGAGAGGAATTCGCATGATTCCAATTTCACCACCAGGCATTCAGGATCCAGCTCTATAACGAGGGAGCCTAACCATAAAAAAGTAGCACCAGCATCACC AGAACCACATGCCTTGAATCGAGCACAAGTTTCGAGCGAGAACATGAATAGTATGACTGAAACTACACTCTTCGACCAAATGAGAGTTGGTGATGCTGGC GACAAACTAGCTTCGAGGGGAAATGGCATCCATGGTAACGGTTTAGATAACGTAGAGGGAATGAAGAAAAAGAAGAAGAAACCTCGGTTTGCTATAGCTG GAAGCCATAGCAATGGTGTGCAGCAGAGAGGGAAGAAGCAGCATCATCCATTGTGTTGCTTTATTCCTGGGTCAAGTTCAGTTAAGTGA
AA sequence Show only first row Show all	>Lus10021251 pacid=23178203 polypeptide=Lus10021251 locus=Lus10021251.g ID=Lus10021251.BGIv1.0 annot-version=v1.0 MGDKKGEIFQYRARLDKSLASPELTNHATLKGLVRDQMLQSRLDENEECSEDLLDKRTGDVSNFLDMLRSASDNGSEPSKTNEPPSGDWKVKESNREYRV MYRPGLQGTPFHTLLVEGYVDGPVDACLCIGWESTLYRKWWPQIIMPPFRIIVCKCLKRIRIGEQISLVRVKVSWPLQAREVVIHYVLFEYIEEGISIVL LNTIPGLDTIDINTHGYTKDGIPEAEDVVRADLVGGFALQKVSSTRSYFRTIATVDLKLDFVPPALINFISRQLIGSGFKLYQKVVTGLGKNDDEEYVQA LADPFYVKKREAIYATDVKHKMKEGKGSPDSISLPQRDRSITLGERSSEEKKGNTDEDDVDAERLITEQKKEVNEIEECESEGIEVLVDEVEIKRAEHKD EKNGIAGGILLDDGSLVAEMYSSSDEISEDGDEDIGQPSASTIRIAEKGSVKSEKNVAINPEVKRALETLEKAIFMVRNSKPNALERPLPTAVDEETSNG AEKDSSPVKDNNDRKRQNANDVPPEAPARNVRLTERNSHDSNFTTRHSGSSSITREPNHKKVAPASPEPHALNRAQVSSENMNSMTETTLFDQMRVGDAG DKLASRGNGIHGNGLDNVEGMKKKKKKPRFAIAGSHSNGVQQRGKKQHHPLCCFIPGSSSVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06440			unknown protein		Lus10021251 [exp]	0	1
AT5G57910			unknown protein		Lus10022161 [exp]	1.0	0.8864
AT4G38520			Protein phosphatase 2C family ...		Lus10024008 [exp]	1.4	0.8255
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	6.2	0.8177
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	7.3	0.7869
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	8.5	0.8002
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	11.3	0.8145
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	11.4	0.7771
AT4G14385			unknown protein		Lus10011821 [exp]	12.8	0.8105
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	14.4	0.7699
AT4G23730			Galactose mutarotase-like supe...		Lus10028739 [exp]	14.6	0.6937

Compare expression of checked genes

Lus10021251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.