Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62980 162 / 2e-52 FOLB2 Dihydroneopterin aldolase (.1) AT3G11750 157 / 2e-50 FOLB1 Dihydroneopterin aldolase (.1) AT3G21730 134 / 6e-41 FOLB3 Dihydroneopterin aldolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013600 [exp] 267 / 7e-94 AT3G11750 158 / 1e-50 Dihydroneopterin aldolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067200 [exp] 209 / 4e-71 AT3G11750 166 / 1e-53 Dihydroneopterin aldolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0334 [flax] [poplar] THBO-biosyn PF02152 [flax] [poplar] FolB Dihydroneopterin aldolase
Representative CDS sequence Show only first row Show all	>Lus10021252 pacid=23178294 polypeptide=Lus10021252 locus=Lus10021252.g ID=Lus10021252.BGIv1.0 annot-version=v1.0 ATGGAAGATCAAGAAGTAATCACTGGAGGAGATAAGCTTATACTAAGAGGCTTGAAGTTTCATGGTTTCCACGGAGTGAAACCGGAGGAGAAGTCGTTGG GGCAGAAGTTTGTGATAGATGTAGATGCGTGGATGGATCTCCGACCAGCTGGCTTTTCTGATCAATTGGTAGACACCATTAGCTACACTGACATCTACCG CATAGTTAAGGAAGTTGTGGAAGGGAAGCCACGGAACCTGCTGGAGACAGTGGCTCAAACTATTGCCATGACCACCTTGACGAAGCACGCTCGGATAACT GCTGTGCGTGTGAAAGTTGAGAAGCCTCATGTTGCTGTTCATGGACCTATCGACTATCTCGGGGTTGAGATTCTGAGGCGTCGAGTTGTTGATCTGCCCA AGTGA
AA sequence Show only first row Show all	>Lus10021252 pacid=23178294 polypeptide=Lus10021252 locus=Lus10021252.g ID=Lus10021252.BGIv1.0 annot-version=v1.0 MEDQEVITGGDKLILRGLKFHGFHGVKPEEKSLGQKFVIDVDAWMDLRPAGFSDQLVDTISYTDIYRIVKEVVEGKPRNLLETVAQTIAMTTLTKHARIT AVRVKVEKPHVAVHGPIDYLGVEILRRRVVDLPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	4.0	0.8753
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	4.4	0.8879
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	5.5	0.8694
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	6.0	0.8821
AT5G51960			unknown protein		Lus10036504 [exp]	6.9	0.8528
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	10.7	0.8772
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	11.1	0.8286
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	11.7	0.8624
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	12.2	0.8598
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10021229 [exp]	14.1	0.8523

Compare expression of checked genes

Lus10021252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.