Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22030 778 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 594 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT1G32850 582 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT4G10590 575 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT4G10570 575 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT2G32780 94 / 2e-19 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G04860 94 / 3e-19 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT5G46740 84 / 3e-16 UBP21 ubiquitin-specific protease 21 (.1) AT5G57990 77 / 4e-14 UBP23 ubiquitin-specific protease 23 (.1) AT2G22310 74 / 1e-13 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013599 [exp] 1744 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 803 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 780 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 623 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 605 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 598 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10038994 [exp] 595 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10001661 [exp] 577 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 419 / 4e-132 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201100 [exp] 989 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G214800 [exp] 842 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 637 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 611 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.011G152500 [exp] 597 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 592 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G067400 [exp] 244 / 3e-72 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G123200 [exp] 87 / 2e-17 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1) Potri.017G055600 [exp] 87 / 3e-17 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.006G266100 [exp] 86 / 6e-17 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10021253 pacid=23178163 polypeptide=Lus10021253 locus=Lus10021253.g ID=Lus10021253.BGIv1.0 annot-version=v1.0 ATGACCCGCCGTCTCTCCGGTAAGCTCAGCCGTCTCTCGATCTTCACCAACTCCGCCGGATTCCTTTCTTTCAAGCTTGCTCGTTTATCCCTCTCGACCT TGCGCTTCTTCAAGACCTTGCTCTCTCGTTTCCCCTTTCTTAAAACCCTCGTACTCGTCCGCCGTCGTTCCTCTGCTTCCCCTTCCTCATCTATGGACGA CGATTTCCTCTCCTCCGTTGACGAAAACAACTTCCTCGAGCTCGATCTCGACAACGTTTACAACTCGGCCTCTTCGTCCTCCGATAATCACCACCGGATT TCCGTCAATGACGGCGAGGAAGACTTCGGGAATGAGGTCGAGAAGCTCTACTTAGTCGATTTCAGATGGTGGAGTGAGGTGCAACATCGGCCAGATCAAG TCGGAGTGTTGTATAATGTTGATTCGAGCTATGATGATGAGGCGATTCAACTATGCTTGAATAGAGAAAATAAGTTGGGGGACAATGATGATGTGGAGGA AGGGTTCTCAGGCAGGGAGTATGCTTTGCTCTCCGAAACAATGTGGTTGCAGTCATTGAAGTGGCATAACGATTCTAAAGGGATATTGAAGGCCGTTAAT CGCCCTTATGTTGCTGAAGACAACTACGAAGATATATTTTCCTTACAAGTCAGGCTTTCTGTTTCTTGGGAAACAAACTCTTTGCTTGCAAAGATCAATT TTAAGGACAATTTGGCTGCTTCATACAGGAGAGCATGTACTATTTTTTCTCCCAAGTCCAAGCAGTTGCATATTTGGGATTTCTCTGGCCAGACAACTCA ATTATTTATGAGCAGTCAGAATACGGTGTCTAATGGTCCGCTGCGGCAACCACTAGAAGAGATAAAACTAGAACTCCAAGTCCATGGATTCGCAGAATAT ATTGAGGAGCAAGATGGGAATATAGATAAGGAGGACAACAGTTCAACATCTTTATTCAGTGGTGGGTCAGCAAAAATGAATGGAACTAGTGATTGGACAA CATCTTATTCAAGCGGCACAAACTCCTTATCTTCTTTTACTGGTCATAGGGAGGTCGGTTCTCTGGGTTTGAAAGGACTTCAGAATCTTGGAAATACTTG TTTCATGAACAGTGCTATGCAGTGTTTAGCACACACACCAAAGCTAGTTGACTATTTCCTTGGTGACTATAAGAAAGAGATGAACCGTGAAAATCCCCTA GGAATGAGAGGCGAGCTTGCTTCGGCATTTGGAGACTTGTTAAGAAATTTATGGTCACCAGGATCAGCCGCAGTAGCTCCAAGGTTATTCAAGTTGAGGC TTGCTACTTTTGCTCCCCAATTTAGTGGCTACAATCAACATGATTCTCAAGAATTTCTTGCATTTTTGCTGGATGGACTGCATGAGGATTTGAATAGGGT GAAGAAAAAGCCATACATTGAGGTTAAAGATGCAGAGGATCGTCCAGATGCTGAGGTTGCAGCAGAATACTGGTGGAATCATATGGTTAGGAATAACTCT ATTGTAGTTGATCTATTCCAAGGCCAGTACCGATCAATGTTGGTTTGCCCTTTTTGCCAAAAATCATCTGTCACGTTTGATCCATTTATGTATTTGTCGC TGCCATTGCCTTCAACTACAATGCGCACAATGACACTAACAGTCTTGGGTGTGGATGGTTCTTGTATGCCATCTCCCGTCACAGTTAACGTCCCAAATGG TGGGCAGTTAAAGGATCTCACGGATGCACTGAGCAGAGCATGTTCCTTAAGAAGTGATGAAACATTGCTACTGGCTGAGATATATAGGAATAAAGTTTTC AGCTTCTTTGACGATCCAACCGGTTCACTAGCCTTGATCAGAGATGATGATACACTTGTTGCTTATCGGTTACCTAAAGAAATTGAATCATCCCCCTTGG TTGTGTTTACGCATAAACGTGCAGAAAAGTTCCGTTATTCGACGACGCCATCAATTGAGGCGTTTGGCATTCCATTTGTAACCAGCTTATCTGCTATCTC AAAGGGGCTCGATCTTTGCAAACAGTTCTTGAAACTTCTCAATCCGTTTCTGAAGCAAGTTGATGAAGTTTCAGAAGTTGAAGATGCAAGGATAATCTCT GTTGAAGATTCTGGGATGGAAGATGCCAGCAGCCCTGCAAAATCTTGTAGCGACTCAGACACTGTATCTGATACTGAAGACAGTGAGCTTATCACGCCTG GCTTTAAATTCTGCCACAAAGATGATTTGTCCAATGAGATAACGATGGAGGATCCATTGTTGATTTCTGAGTTAACAGACAGGTTTCATGTATCTGTTTT CTGGTCGGCAAGCATGGTGTCAATGTACGATACATCTCTCCTCGGCTCATTGCAAAAAGTCTCTAATTTGGAGTTACCTATGAAGAGATTAAAGGAGTCC ATTTCCTTATACAAATGCCTTGAATCCTTCTTGAAGGAAGAGCCTTTAGGACCAGAAGACATGTGGTACTGTCCCAGCTGCAAGAAGCCTCGTCAAGCAA CTAAAAAGCTGGATCTTTGGAGACTGCCTGAAATTTTAGTCATCCATTTAAAGAGGTTCTCGTACAATCAATATATTAAGAACAAGTTGGAAACATATGT GGACTTCCCCATTGATGATCTTGATCTCTCAAATTATATATCCTACAATAATGGCAATTACTCCAGTGGTTACGCCTTATATGCGATAAGTAACCATTAT GGAGGCATGGGAGGTGGTCATTATACGGCTTTTGTTGATCACGGACATGATATGTGGTACGAGTTTGATGATGAACGAGTTTTTCCAGTCAGTAAGGAGA GTATTAAATCTTCTGCTGCTTATGTTCTTTTCTATCGGAGAGTGTGA
AA sequence Show only first row Show all	>Lus10021253 pacid=23178163 polypeptide=Lus10021253 locus=Lus10021253.g ID=Lus10021253.BGIv1.0 annot-version=v1.0 MTRRLSGKLSRLSIFTNSAGFLSFKLARLSLSTLRFFKTLLSRFPFLKTLVLVRRRSSASPSSSMDDDFLSSVDENNFLELDLDNVYNSASSSSDNHHRI SVNDGEEDFGNEVEKLYLVDFRWWSEVQHRPDQVGVLYNVDSSYDDEAIQLCLNRENKLGDNDDVEEGFSGREYALLSETMWLQSLKWHNDSKGILKAVN RPYVAEDNYEDIFSLQVRLSVSWETNSLLAKINFKDNLAASYRRACTIFSPKSKQLHIWDFSGQTTQLFMSSQNTVSNGPLRQPLEEIKLELQVHGFAEY IEEQDGNIDKEDNSSTSLFSGGSAKMNGTSDWTTSYSSGTNSLSSFTGHREVGSLGLKGLQNLGNTCFMNSAMQCLAHTPKLVDYFLGDYKKEMNRENPL GMRGELASAFGDLLRNLWSPGSAAVAPRLFKLRLATFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKKKPYIEVKDAEDRPDAEVAAEYWWNHMVRNNS IVVDLFQGQYRSMLVCPFCQKSSVTFDPFMYLSLPLPSTTMRTMTLTVLGVDGSCMPSPVTVNVPNGGQLKDLTDALSRACSLRSDETLLLAEIYRNKVF SFFDDPTGSLALIRDDDTLVAYRLPKEIESSPLVVFTHKRAEKFRYSTTPSIEAFGIPFVTSLSAISKGLDLCKQFLKLLNPFLKQVDEVSEVEDARIIS VEDSGMEDASSPAKSCSDSDTVSDTEDSELITPGFKFCHKDDLSNEITMEDPLLISELTDRFHVSVFWSASMVSMYDTSLLGSLQKVSNLELPMKRLKES ISLYKCLESFLKEEPLGPEDMWYCPSCKKPRQATKKLDLWRLPEILVIHLKRFSYNQYIKNKLETYVDFPIDDLDLSNYISYNNGNYSSGYALYAISNHY GGMGGGHYTAFVDHGHDMWYEFDDERVFPVSKESIKSSAAYVLFYRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	0	1
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	1.4	0.9349
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	2.0	0.9340
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	4.0	0.9296
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	4.2	0.9265
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	4.9	0.9312
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	6.7	0.9146
					Lus10018257 [exp]	6.9	0.8886
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	7.6	0.8977
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	7.7	0.9286
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	8.4	0.9226

Compare expression of checked genes

Lus10021253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.