Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11780 180 / 6e-59 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) AT5G06480 165 / 5e-53 Immunoglobulin E-set superfamily protein (.1) AT3G44100 132 / 3e-40 MD-2-related lipid recognition domain-containing protein (.1) AT2G16005 57 / 1e-10 MD-2-related lipid recognition domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013596 [exp] 270 / 1e-94 AT3G11780 181 / 2e-59 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Lus10013366 [exp] 154 / 9e-49 AT3G11780 161 / 1e-51 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201400 [exp] 165 / 4e-53 AT3G11780 170 / 6e-55 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Potri.016G067800 [exp] 158 / 2e-50 AT3G11780 156 / 1e-49 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0532 [flax] [poplar] LIG PF02221 [flax] [poplar] E1_DerP2_DerF2 ML domain
Representative CDS sequence Show only first row Show all	>Lus10021256 pacid=23178214 polypeptide=Lus10021256 locus=Lus10021256.g ID=Lus10021256.BGIv1.0 annot-version=v1.0 ATGAATCCGTGCAAGCTGATTGTTTCCTTCACGTTGTTGCTCTGTCTGCTGGCGCCATTGATTCAGGCTACGGATTTCCGGTACTGCGATAAGAAGGGTG ATCATGGCGATGTTAAGGTGAATGGAGTAGAGATTACGCCGAACCCGATCACAAGAGGCAAGCCGACTAACTTCACCATCAAAGCCACTGCAGATAAGGG ATTCTCAGGAGGCAAACTCGTGATTGATGTCTCATACTTTATATTTCACGTATATTCCGAGACTAAGAACTTGTGTGATGAGACATCATGCCCTGTATCT ACCGGTGATTTTGTGGTTTCTCATTCAGAGATTCTTCCGGGAGTCACTCCACCTGGTTCATACACCATCCAAATGAAGATGCGTGATTCGAAGAACAAAG AGTTGACCTGCATTGCCTTCGACTTCAGCATCGGGTTCGGGTCCTCTGTCGCAGATATGTAA
AA sequence Show only first row Show all	>Lus10021256 pacid=23178214 polypeptide=Lus10021256 locus=Lus10021256.g ID=Lus10021256.BGIv1.0 annot-version=v1.0 MNPCKLIVSFTLLLCLLAPLIQATDFRYCDKKGDHGDVKVNGVEITPNPITRGKPTNFTIKATADKGFSGGKLVIDVSYFIFHVYSETKNLCDETSCPVS TGDFVVSHSEILPGVTPPGSYTIQMKMRDSKNKELTCIAFDFSIGFGSSVADM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	0	1
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	2.0	0.9754
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	2.0	0.9634
AT2G37530			unknown protein		Lus10024416 [exp]	2.0	0.9565
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	3.3	0.9432
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	4.6	0.9621
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	5.5	0.9558
					Lus10023649 [exp]	6.2	0.9130
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	6.3	0.9474
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	6.5	0.9540
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	7.0	0.9491

Compare expression of checked genes

Lus10021256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.