Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52380 69 / 2e-14 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 64 / 8e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 57 / 5e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 59 / 7e-11 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT3G52150 57 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G50250 52 / 1e-08 CP31B chloroplast RNA-binding protein 31B (.1) AT2G27330 50 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21440 52 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G35410 51 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 50 / 1e-07 Splicing factor, CC1-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013591 [exp] 195 / 9e-63 AT3G52380 130 / 4e-35 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10029372 [exp] 76 / 5e-17 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 72 / 1e-15 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023191 [exp] 65 / 7e-13 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 64 / 7e-13 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 65 / 1e-12 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 64 / 1e-12 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10041952 [exp] 63 / 4e-12 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 62 / 6e-12 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202000 [exp] 73 / 6e-16 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 71 / 4e-15 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 63 / 2e-12 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 63 / 2e-12 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 62 / 4e-12 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G065900 [exp] 57 / 3e-10 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G340800 [exp] 53 / 7e-09 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G090200 [exp] 52 / 1e-08 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G041700 [exp] 52 / 2e-08 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.015G057400 [exp] 51 / 3e-08 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10021260 pacid=23178232 polypeptide=Lus10021260 locus=Lus10021260.g ID=Lus10021260.BGIv1.0 annot-version=v1.0 ATGAGACCTCTGGAGCTTGCGAACCAAGCGACCTCAACCACCACCTTGGTTCGGCCTCGCCGCCGACTCGCCGCGGATTTGGACGATTTGGAGGTAGATA GAGGCGAGAGCTTCACTGAGGAAGATGAGGGCCCGGTAACTGACAATGAGAATCACCCTCAGGAAAGCGAAGAGGAAGATGATGGAGAAAACGGTGGGGC CGGACCATCAAACGACGGACGGACGATTTTCTTTAGCGGTATACCGTTTTCGATGACTTCCGCTGAAGTGACTGAGCTTTTCGACGGGGTGGGTGAAGTG GAGAATGTGAAGCTTATCTGGGATACGATCATGGATAGGAGCAGAGGGTTCGGGTATGTTACAATGGCGACTGCTGAAGAAGCTAATTCAGTTATGCGAA TGTTCAATGGAGCAGTAAGTTTCCGTTATTCTTTTGATTAA
AA sequence Show only first row Show all	>Lus10021260 pacid=23178232 polypeptide=Lus10021260 locus=Lus10021260.g ID=Lus10021260.BGIv1.0 annot-version=v1.0 MRPLELANQATSTTTLVRPRRRLAADLDDLEVDRGESFTEEDEGPVTDNENHPQESEEEDDGENGGAGPSNDGRTIFFSGIPFSMTSAEVTELFDGVGEV ENVKLIWDTIMDRSRGFGYVTMATAEEANSVMRMFNGAVSFRYSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10021260 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	28.2	0.7472
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	29.5	0.7368
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	87.9	0.7092
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	113.7	0.6949
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	133.8	0.6714
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10026005 [exp]	210.4	0.6614

Compare expression of checked genes

Lus10021260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.