Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52390 521 / 0 TatD related DNase (.1.2) AT3G03500 84 / 2e-18 TatD related DNase (.1) AT5G17570 71 / 1e-13 TatD related DNase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013590 [exp] 619 / 0 AT3G52390 524 / 0.0 TatD related DNase (.1.2) Lus10021077 [exp] 78 / 3e-16 AT5G17570 447 / 3e-159 TatD related DNase (.1) Lus10017234 [exp] 65 / 1e-11 AT5G17570 397 / 7e-140 TatD related DNase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068400 [exp] 524 / 0 AT3G52390 566 / 0.0 TatD related DNase (.1.2) Potri.013G073800 [exp] 80 / 7e-17 AT5G17570 456 / 5e-163 TatD related DNase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01026 [flax] [poplar] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Lus10021262 pacid=23178207 polypeptide=Lus10021262 locus=Lus10021262.g ID=Lus10021262.BGIv1.0 annot-version=v1.0 ATGTTCAGTGGGGTTTATCATGGCAAGCAATGCCATATAGCGGATATACCTACTGTCCTTAATCGGGCTTGGAGCTCTGGCGTCGAACGAATCATTGTCA CTGGTGGATCTCTGGAGGAATCAAAGAAAGCTCTTGAGATTGCTGAGACAGACGGAAGGCTTTTCTGTACAGTTGGTGTACACCCTACTAGATGCACGGA ATTTGAAGAAAGTGGGGACCCAGAAAATCATTTCCAAGCTCTGTTGTCGCTGGCCAAAGAAGGAATTGAGAAAGGGAAGGTTGTGGCAGTTGGTGAATGT GGATTGGACTATGACAGGCTCCAGTTTTGCTCTTCTAAGGTTCAGAAGAAGTATTTTGAGAAGCAGTTTGAATTAGCACATGCCACAAAGCTGCCTATGT TTCTTCATATGCGTGCAGCTGCAGAAGACTTTTGCGAGATCATGGAGTCTAACAAATACAGATTTACAGGTGGCGTAACTCATTCCTTTACTGGAAGTGC AGAAGAAAGCAATAAGCTTCTCTCATTCAAGAATTTGTATATAGGTGTGAATGGTTGCTCTTTGAAAACAGCTGAGAACATTGATGTTGTGAGGCAGATT CCGATTGATAGAATGATGATAGAGACAGATTCTCCCTACTGCGAAATAAAGAACACCCATGCTGGGATCAAACTTGTGAAATCATCGTGGCCTTCCAAGA AGAAAGAGAAGTATGAGCCAGGGTCCATCGTTAAAGGCCGGAACGAACCTTGTTTAGTTAGGCAAGTTCTTGAGGTTGTAGCTGGCTGTAAAGGCGTCAA CCTGGAAGAAATGAGCCGAACTATCTACCACAACACCTGCAGGATTTTCTTTCCCCAAGACTTGGATTCGGCAGCAGAGTCTATTCTTGGTGGCCATCAG GATTCTTAG
AA sequence Show only first row Show all	>Lus10021262 pacid=23178207 polypeptide=Lus10021262 locus=Lus10021262.g ID=Lus10021262.BGIv1.0 annot-version=v1.0 MFSGVYHGKQCHIADIPTVLNRAWSSGVERIIVTGGSLEESKKALEIAETDGRLFCTVGVHPTRCTEFEESGDPENHFQALLSLAKEGIEKGKVVAVGEC GLDYDRLQFCSSKVQKKYFEKQFELAHATKLPMFLHMRAAAEDFCEIMESNKYRFTGGVTHSFTGSAEESNKLLSFKNLYIGVNGCSLKTAENIDVVRQI PIDRMMIETDSPYCEIKNTHAGIKLVKSSWPSKKKEKYEPGSIVKGRNEPCLVRQVLEVVAGCKGVNLEEMSRTIYHNTCRIFFPQDLDSAAESILGGHQ DS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52390			TatD related DNase (.1.2)		Lus10021262 [exp]	0	1
AT4G27120			unknown protein		Lus10011161 [exp]	16.8	0.8595
AT2G20410			RNA-binding ASCH domain protei...		Lus10006580 [exp]	18.8	0.8361
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	31.1	0.8137
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	46.2	0.8315
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	61.4	0.8013
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017820 [exp]	63.6	0.7585
					Lus10034731 [exp]	65.8	0.8208
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	78.7	0.8052
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	84.3	0.8097
					Lus10000019 [exp]	117.5	0.7869

Compare expression of checked genes

Lus10021262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.