Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11820 437 / 2e-154 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 385 / 7e-134 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G61290 367 / 2e-127 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 363 / 5e-126 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 334 / 2e-114 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G03800 258 / 1e-84 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 251 / 8e-82 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G08560 240 / 2e-77 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 194 / 7e-60 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G16830 50 / 6e-07 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013589 [exp] 535 / 0 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10016173 [exp] 491 / 4e-176 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 473 / 5e-169 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10018441 [exp] 360 / 1e-124 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 358 / 4e-124 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10006735 [exp] 355 / 1e-122 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10020089 [exp] 351 / 4e-120 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10042527 [exp] 266 / 1e-87 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 264 / 6e-87 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202200 [exp] 478 / 2e-171 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 456 / 1e-162 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.011G043700 [exp] 364 / 2e-126 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.004G035400 [exp] 360 / 7e-125 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 280 / 5e-93 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 270 / 2e-89 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 257 / 3e-84 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 220 / 5e-69 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 206 / 2e-64 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 198 / 1e-61 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10021263 pacid=23178277 polypeptide=Lus10021263 locus=Lus10021263.g ID=Lus10021263.BGIv1.0 annot-version=v1.0 ATGAACGACCTCTTCTCCGGCTCCTTCTCCCGCTACCGCAGCGACGACAACACATCCCCAGCCGCCCCTTCTTCCCCCGACCACCCCCACCACGTTATCC AGATGTCCGAGTCCCAGTCCGCCTCCGCCGGCGTCAACCTCAACAAGTTCTTCGACGATGTCGAGTCCATCAAGGACGACCTCAAGCAACTCGAGAAGCT CAACTCCAGCCTCCAGTCCTCCCACGAGCGCAGCAAGACCCTCCACCAGGCCAAATCCGTCAAGGACTTGCGTGCCAAAATGGACGCCGACGTCGCCACC GCCTTGAAGACCGCCAAGCTTATTAAAGTCCGCTTGGAGTCCCTTGACCGTTCCAACGCTGCTAATCGGAGCCTCCCCGGTTGCGGACCCGGGTCGTCCT CTGACCGAACGCGAACCTCAGTGGTTAACGGGCTGAGGAAGAAGCTCAAGGACTCCATGGAGAGTTTCAATGCTCTGAGGGAGAAGATTTCGTCCGAGTA TCGGGAGACGGTTGGGAGGAGGTTCTTCACCGTCACTGGAGAGAATCCTGACGAGAAGACGCTCGATCGTTTGATCTCCACAGGCGAGAGCGAGACTTTT CTGCAGAAGGCGATCCAAGAGCAAGGCAGGGGGAGAGTACTGGACACGATCAATGAGATTCAGGAGAGGCACGATGCGGTGAAGGACATGGAGAAGAACC TCAAGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGCTGGTGCAGGCACAAGGCGAGCAGTTGGACGACATTGAGAGCAATATGCAGAGAGCAAGCTC CTTCGTCCGTGGAGGAACTCAGCAGCTGCAGACTGCCAGAGTCCTCCAGAAGAACACCCGGAAATGGACTTGCTACGCCATCACCATCCTCCTAGTTATC ATCCTCCTTGTTGTTCTCTTCACCGTCAGGCCGTGGGACAACAACGGCGGTGGCGGTAACAACCAACCTGCAGCTCCAGTTCAGAATCAACCCCCACCTG CGCAGATTCAACCCCCACCTCCAGGAGTATAG
AA sequence Show only first row Show all	>Lus10021263 pacid=23178277 polypeptide=Lus10021263 locus=Lus10021263.g ID=Lus10021263.BGIv1.0 annot-version=v1.0 MNDLFSGSFSRYRSDDNTSPAAPSSPDHPHHVIQMSESQSASAGVNLNKFFDDVESIKDDLKQLEKLNSSLQSSHERSKTLHQAKSVKDLRAKMDADVAT ALKTAKLIKVRLESLDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNALREKISSEYRETVGRRFFTVTGENPDEKTLDRLISTGESETF LQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFLDMAVLVQAQGEQLDDIESNMQRASSFVRGGTQQLQTARVLQKNTRKWTCYAITILLVI ILLVVLFTVRPWDNNGGGGNNQPAAPVQNQPPPAQIQPPPPGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	0	1
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10039331 [exp]	1.0	0.9090
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	2.4	0.8900
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	3.2	0.9076
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	3.5	0.8752
AT1G29290			unknown protein		Lus10029256 [exp]	4.0	0.8824
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	4.6	0.8739
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	6.0	0.8518
AT3G15518			unknown protein		Lus10037893 [exp]	7.6	0.8339
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	8.4	0.8820
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	10.4	0.8349

Compare expression of checked genes

Lus10021263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.