Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16280 1466 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013588 [exp] 1007 / 0 AT5G16280 533 / 3e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068800 [exp] 1710 / 0 AT5G16280 1531 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021264 pacid=23178262 polypeptide=Lus10021264 locus=Lus10021264.g ID=Lus10021264.BGIv1.0 annot-version=v1.0 ATGGATCCGGCGAGCACGCCACTTGGCAAAATGCTGTTGGAGGAGATCACTCCGGTGGTCATGGTGCTTCGAACGCCTTCCGTCGAGGAAGCCTGCGTTA AGAACGGCCTTTCATTCGTCGAAATGCTCAGCCCTTTCTGTAACTTCAGCAACATCGATGTGCCATTCCGCACGTCTGGTGATCAGCCTTACAGGTTGCG GAAGTTTAAACTGAGGTTGTTTTATGAGTCGGATATCCGGCAGCCAAATATGGAGGTAGCAAAGGAGCGATTGAAGCAGGTAATCACCAAGGCCGGGGAG AAAGATAATTCGGAGTTGTCCTCTGACCCACCTCAAGTCAGTAGTTTACTTGATAACTCTGAATCTGAACTTTTACCTTCATGGTTTGAATACCTAAACA AGGAGCTCATACAAACAGTCTCCTTTTCAGAGCATGAAACCTTTGACCACCCTGTGGCATGTCTTTTAGTTGTGTCATCGAAGGACGAGCAGCCTATCAA TAGATTTGTTGACCTCTTCAATACTAACAAACTACCTGCTCTTCTGAATGATGGTGCAATGGATCCAAAGATTTTGAAGCATTATTTACTGGTTCATGAC AATCACGAAGGGTCTTCAGAAAAGGCTTTAAAAATCCAGTCAGAAATGAAAAGTACATTTGGTACAAATGAGTGCCATTTACTTTGCATTAATTCTTCAC AAGATTCAGAAATGGAACATCAAGATAACCCTTGGGCTTCTTATAAACCTGATGCTTCCCCTGTTCAGCGCCTTGGTTGTCGCCTTAATGTTGATGATAT TAGTGCGTTAAAGGATTTGATACATGATTTTTCATCTAAACATGTGATCCCATATATGGAGCAAAAAGTCCGTCTACTTAATCAACAGGTATCTGCTACA AGAAGGGGTTTTAAAAACCAAATTAAAAATTTGTGGTGGAGAAAAGGGAAAGATGACCCAAATGAAACTCCCAGTGGTTCTATGTATACTTTCAGCTCAA TTGAGTCGCAGATCAGAGTTCTTGGGGACCATGCTTTCATGTTGCACGATTATGAACTTGCATTGGCCAACTATCGCCTTATATCAACAGATTATAAACT TGATAAGGCTTGGAAGCGCTATGCTGGAGTGCAGGAAATGATGGCTCTTGCATACTTCATGTTAGATCAGTCAAGGAAGGAGGCAGAATATTGCATGGAA AATGCTTTTAGCACTTATATAAAACTTGGGTCTTCTGGTCAGCAAAATGCAACACGTTGTGGCCTTTGGTGGATAGGAATGTTGAAGACGAAAGATCAAT ATAAAGAGGCGGCCACAGTTTATTTCCGCATTTGTAACGAGGAATTGTTACATTCAGCTCTGATGCTTGAGCAAGCATCATACTGTTACCTGTTGTCTAA ACCACCCATGTTGTACAAGTATGGATTTCATCTTGTGCTTTCCGGCGATCGTTATAAGAAAAGCGATCAGGTTAAGCATGCCATTCGCACATACAGAAGG TGTGTTGCCCATCTTGGTATGTATGATGTGGCTGTGAAACACATGTTGGAAGTCCTGGCATGTAGTCATCAGTGCAAAACAACTCAGGAGCTATTTCTGC GGGAATTTCTCCAAATTTTTCAGGAAGTGGGGATAACATTTGAGGTTCCAGGGCTTCAGTTGCCTGTAATTGACATCTCATCGCTCAAGGTTATTTTTGA AGACCAGCGGACATATGCATCACCTTCAGCGGCTAGTGTTCATGAAAGTGTTTGGCATTCATTAGAGGAAGACTTGATTCCCTCACTGCCTGGAGCTAGG ACAAACTGGCTGGATGTGCAAACAAAGCTTATGCCCAAGAAATACCGAGAATCAAACGTCTGCGTGGCTGGAGAGGCAATAAAGGTGACTGTTGAATTTA AGAACCCCCTGCAAGTCCCTATCTCAATTTCTAGTGTGTCCTTGATATGTGATCTTTCTCCAAGATCAGAGGAAGATAAATCTGATGCAAATAGTACATC AACGTCTGAACTTCCATATCATGAAGAAAGGGATGTTAGTTCTGACAGTTCTTCAGTTATTTTATCCGAGATCGATTTCTCTTTAGGAGGGGGTGAAACG AAGTTGGTGCAGTTGACAGTTACTCCTAATATTGAAGGGACACTAAAACTTCTAGGTGTCAGGTGGAAGTTTTCAGGCTGTGTTGTTGGTTTTTACACTT TTGAGTCCATTCTTTTGGTGAAGAAACTCGCAAGGAAGAGGAAATCTAAGCATTCACCTCTTAGTGACCTGAAATTTGTAGTCGTTAAGTCTGTACCAAA GCTTGAGGGTCTCATTCGTGCTTTTCCAGAAAAGGTGTATGCTGGACATCTACAACATCTCGTTTTGGAATTGAAAAACCAATCAGATTGTTGTATAAAG CATCTAAAGATGAAGATAAGTCATCCTAGGTTTCTTAGCATTGGGAATCAAGAAGTTCTGGATATAGATTTTCCTGCTTGCTTAGAAAAACGGCCAGGCA ATGAAGAGGATGGTGCACATGCTAATCTAAAAAAGGTGTCTCAAGGTGTTTTCCTCTTTCCCGAGGATGTTGCAATACAAGGAGACAAGCCATTATTGTG GCCACTATGGCTTCATGCTACTGTTCCTGGACATGTTCCATTGTACGTAATAATATACTATGAGATGGAGGATACGTCTAGTGTGATGAGATACCGCACA CTGCGGTTGCATTATAATTTGCAGGATGATGAATCATCCCTCAGCTTAATGCCATTGCACATCTTAATCCTTAGAACTTGTTCCAAACAGGTGTTGCCAT CATTGGATGTTTCATTTAAAATCAGTCCTTCCCCTTCAAGGTTGCAAGAGTTCCTTGTGCGCATGGATGTTGTCAATAAAACTAGTTCGGAGAGTTTCCA GGTCACCCAGCTGTCTTCAGTTGGAGACAACTGGGGAATTTCAATGCTTCAACCTGTCGATGGAATCATGCCGTCACAACCTCTGGCTGTTGGCCAAGCG TTCTCCTTTTTCTTCATGCTCAAGAGTCGTAGGAAAGCGGTGAATGCAGCAGAAAATGTGTCAGCTCTTTCTCCTGATCTCGGAAGTGATGTAGTGTTGG TCTCTGAGAGCGTGAAAGAGCCCCTCTTTCGTGTATCCAACTCTCCTTTGGCCGATTTCCATGATTCGGAAAGATCACAACACGGAACCCATAACCAGGA AAATGACAATACAGTGGACTTCATCTTGATTTCTCGGCCACTGAAATCTGGAATGACCGATGAACCTCAATTCTTCTCCCATCATGCGTGCCACTGCAGG CAAGACTATTCTCTCTTCCCTTTTACTAAGGATACGCATCGTAGAACTGCAAGCACAAGCCCGATAACGTGGACAATGAGTGGACCTCGAACCAAACACC ACAACTTCTCATCTTCGTTCTGTGAAATAAGTCTGCAGATGACGATCCACAACTCATCAGACTCTGCTGCATCAGTGAGCATTAACACTGCAGACTCTGC TGGCAACGGCAGCCAATCAAACACTACCGGAAACCAGGGCGGATGGCAGCCAGTGGTTACAGACACTAAGGCGGCCCCGACTTCTGAAGCCGAAATCGTA ACCAGGAAGAACGAGTCATCGGAACCCATCTCCCCTGTCTCTCCGTTCATCTGGTCCGGTTCAAGCTCCAGCAACGTCCAACTCCAGCCGAGGTCCTCTG CGGAGATTCGTATGCAGATTTGTGTCTTCTCCCCAGGCACTTACGATCTATCGAGCTACGTTTTGAAATGGAACCTGAAACCAGAGGAAGCAAACGTGGA TTTGCAGAGGAATCCGGATGAGATGAGGAAACTGTCTGGGACTTGCCAAGGGTATCCATACTTCTTAACGGTTCTCCAGTTATAA
AA sequence Show only first row Show all	>Lus10021264 pacid=23178262 polypeptide=Lus10021264 locus=Lus10021264.g ID=Lus10021264.BGIv1.0 annot-version=v1.0 MDPASTPLGKMLLEEITPVVMVLRTPSVEEACVKNGLSFVEMLSPFCNFSNIDVPFRTSGDQPYRLRKFKLRLFYESDIRQPNMEVAKERLKQVITKAGE KDNSELSSDPPQVSSLLDNSESELLPSWFEYLNKELIQTVSFSEHETFDHPVACLLVVSSKDEQPINRFVDLFNTNKLPALLNDGAMDPKILKHYLLVHD NHEGSSEKALKIQSEMKSTFGTNECHLLCINSSQDSEMEHQDNPWASYKPDASPVQRLGCRLNVDDISALKDLIHDFSSKHVIPYMEQKVRLLNQQVSAT RRGFKNQIKNLWWRKGKDDPNETPSGSMYTFSSIESQIRVLGDHAFMLHDYELALANYRLISTDYKLDKAWKRYAGVQEMMALAYFMLDQSRKEAEYCME NAFSTYIKLGSSGQQNATRCGLWWIGMLKTKDQYKEAATVYFRICNEELLHSALMLEQASYCYLLSKPPMLYKYGFHLVLSGDRYKKSDQVKHAIRTYRR CVAHLGMYDVAVKHMLEVLACSHQCKTTQELFLREFLQIFQEVGITFEVPGLQLPVIDISSLKVIFEDQRTYASPSAASVHESVWHSLEEDLIPSLPGAR TNWLDVQTKLMPKKYRESNVCVAGEAIKVTVEFKNPLQVPISISSVSLICDLSPRSEEDKSDANSTSTSELPYHEERDVSSDSSSVILSEIDFSLGGGET KLVQLTVTPNIEGTLKLLGVRWKFSGCVVGFYTFESILLVKKLARKRKSKHSPLSDLKFVVVKSVPKLEGLIRAFPEKVYAGHLQHLVLELKNQSDCCIK HLKMKISHPRFLSIGNQEVLDIDFPACLEKRPGNEEDGAHANLKKVSQGVFLFPEDVAIQGDKPLLWPLWLHATVPGHVPLYVIIYYEMEDTSSVMRYRT LRLHYNLQDDESSLSLMPLHILILRTCSKQVLPSLDVSFKISPSPSRLQEFLVRMDVVNKTSSESFQVTQLSSVGDNWGISMLQPVDGIMPSQPLAVGQA FSFFFMLKSRRKAVNAAENVSALSPDLGSDVVLVSESVKEPLFRVSNSPLADFHDSERSQHGTHNQENDNTVDFILISRPLKSGMTDEPQFFSHHACHCR QDYSLFPFTKDTHRRTASTSPITWTMSGPRTKHHNFSSSFCEISLQMTIHNSSDSAASVSINTADSAGNGSQSNTTGNQGGWQPVVTDTKAAPTSEAEIV TRKNESSEPISPVSPFIWSGSSSSNVQLQPRSSAEIRMQICVFSPGTYDLSSYVLKWNLKPEEANVDLQRNPDEMRKLSGTCQGYPYFLTVLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	0	1
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	3.9	0.9467
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	5.5	0.9281
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	6.6	0.9326
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	12.0	0.9178
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014897 [exp]	12.5	0.9276
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10028871 [exp]	16.0	0.9210
AT3G04490			unknown protein		Lus10022024 [exp]	16.4	0.8893
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	16.4	0.9167
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	16.4	0.9202
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	18.8	0.8924

Compare expression of checked genes

Lus10021264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.