Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05680 1827 / 0 EMB2016 embryo defective 2016 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013587 [exp] 2576 / 0 AT3G05680 1603 / 0.0 embryo defective 2016 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069100 [exp] 2355 / 0 AT3G05680 1984 / 0.0 embryo defective 2016 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021265 pacid=23178256 polypeptide=Lus10021265 locus=Lus10021265.g ID=Lus10021265.BGIv1.0 annot-version=v1.0 ATGGGTCGACCCGAGCCATGCGTCTTGTTTTCCCAGACCTTCGTTCACCCTCAACTCGACGAGTACGTTGATGAGGTGTTGTTTGGAGAGCCGGTTGTGA TTACAGCTTGCGAATTCCTAGAACAGAATGCACCTTCTGCCTCCCAAGTGGTGTCATTGGTTGGGGCTACTGCACCTCCTTCATTTGCTTTGGAGGTATT TGTACAATCTGAGGGAGAGACGAGATTCAGGCGTTTGTGCCAGCCCTTCCTCTATTCCCATTCGTCGTCAAATGTTTTGGAAGTTGAGGCTGTTGTAACT AACCATCTAGTTGTAAGAGGTAGCTACCGCAGTCTGACATTGGTAATATATGGAAACATGGCAGAGGATCTAGGCCAGTTCAATATTGAGTTCGATGATA ACTCTTTAACTAATCTTGTTACTTCTGCTGAGGGGAAGCTGGAAGATCTGCCTGTGGCACTGCATTCAGGTTCTAGGGCCATAGAGGAATCATTAATCTC TCTGAAAGTGTTATCTCTACCTGTTGTGGATCTGGATTTATCTACGGAAGTCAAGCAGTTCTTACAACTAACTTCAAAGATGTTAGAGATGCCCCTCCTA GAAGAATCTGTGTACAAGGTTGTAAGTACCATTGTCACAGCTGTTTGTTCTCATGTAACCCACGATTCATGTCGTGAGATTCTTGGTGGAAAGAATTCTA AACCAAGCGGATCTAACGAGTCTGAAGAGTTTTCCCATATTATTACTGAGGCTAAGAAGGAGCTTCTTGGAGTCCTTCAGTCTTCAGGAAATGATATGGC CCATGTTTTGGTGGATGGTAGTTTTCTAGAATCTGAAGATGACTTGGCTACTTCAAAAGAATTGGTGGAAATGTTTAGGCCACACCTTTGTTTCGACAAG AACTCTTCCCAACCACACGAGCTTTTACAGAACGAGAACTTCTTGGGGCTGTGTGTTGGTTTTTTATTGTGTTCTGGTAGAGAAAGTTGCTTTCACTTTG TGAATCAAGGGGGAATCGAGCAACTTGCCCACTTTTTCTCCCATGAAATACCGAACTCTTCAGCAGTTGTTTTACTCTTACTTGGGGTTATTGAGCGGGC TACTCGGCATCCAATCGGCTGTGAAGGAATCTTAGGCTGGTGGCCCAGAGAAGATGAAAACGTCCCTACTGGGTTTAGCAAAGGTTATAGTCAATTGCTG AAGTTGTTCCTAGAAAAACCACGCCATGATGTTGCTTCCCTGGCAACTTACATCCTTCATCGTCTTAGAGTCTATGAAGTTGCTTCAAGATATGAGTCTG CTGTTCTATCTGCGTTGGCTGGTCTTTCTGCCGATGAAACAGTAACAAATCATATGGAAAGCATTCTTGACTGTGTTAAGTTTCAACTGAAAAAACTCTT GAAATTGATCAATTCACTTGGTCCAATTGAAGATCCTTCTCCAGTGGCTCATGCAAGCCGATCATTGATCCTTGGTCAAACGGAAGGGCAATTGTCGTAT AAAGCAACCAGTTCCTTGATTGATTCCTCTGATTGCCCCTTTCTCAATTGTGATCTTGATTCCCATTTGCTGGGACTTCTGAAGGAGAGAGGCTTTCTTC CATTATCAGCTGCACTTTTGTCATCACCTTTATTGCGCTCAGATGCTGGAGAGGCCATGGGCACATTTGCTGAAATCGCATCAACTATTGGGGCCATACT TCTCTCTCTTCTTATGCGTCGCTCAGGCTTACTTTTCCTCTCAAATCATCCTGAAGTCTCCACCGTCCTAATTGAAGCTTTGAGGAACACAAATGGAATG AGAATAGAAGAATCCCTTCCTCTGAGATATGCATCTATTTTATCAGCAAAGGGTTTTGTTTGTGGTCCTCGCGAAGTGGGAACAATCATCGAGACACATT TGAGAGTGGTTAATGCTATTGACAGATTGCTTTTACTCACTCCACATACAGAAGAATTTCTGTGGGTGTTATGGGAGCTATGTGGTCTCTCCAGATCTGA CTGCGGACGCCAAGCTTTGTTGGCTCTGGGATGTTTTCCAGAGGTTATATCAACCTTGATTGAAGCTTTGCACGCTGTTAAGGAAACCGAGCCAGATGCC AAGGGTGGTGGAGCTTCCCCTATAGATGTGGCAATTTTTCATTCAGCTGCCGAGATATTCGAAGTGATCGTCACTGATTCAACTGCGTCTTCCTTGAAGT CTTGGATTGGACATGTGATGGAACTCTATAAAGCGTTACATTCCTCTTCCCCTGGATCCAATAGGAAAGATGCTCCTACACGACTTTTGGATTGGATAGA TGCCGGTGTTGTTTACCACAAAAATGGGGCTATCGGTCTTCTTAGGTATTCTGCTGCGTTAGCATCTGGAGGGGACACACATTTAACTTCTGCCAGTACT CTAGTTTCAGATTTAACAGATGTTGAAAATGTTGTGAGTGATGCTTCTGGAGGTCCAGATATATATGTCTTGGAAAATTTGGCAAAAATGGCTTCAGAGA AGACATTTGAGGGTGTTACACTTCGTGACTCAGCAATACCTCAGTTGACAACAGCCATTAGAATTATGGCTTTCATTTCAGAAAACTCAACTGTTGCTGC AATTCTGTACGATGAAGGTGCTCTGACAGTAATCTATGCTATTGTCGTCAACTGCAGCTTCATGCTGGAGAAGTCATCAAATATATATGATTATCTTGTT GACGAAGGAGCAGAAGGAAACTCTACGTCTGATTTATTGTTGGAACGTAACCGTGAGCAGAGCTTAGTTGATCTTTTGGTTCCTTCTCTGCTATTGTTGA TTACCCTTCTGCAGAAACTGCAGGAAGCGAAAGAACAGCATAGGAACACAAAATTGATGAATGCGCTTCTCCGCCTACATCGGGAAGTAAGCCCAAAGCT TGCTGCATGCACAGCAGATTTGTCATCTTCTTATCCCGATTCTGCACTTGGTTTTGGAGCTGTCTGCCATCTGACCGTGTCAGCTCTTAGTTTCTGGCCG GTTTATGGATGGACGCCTGGCCTTTTCCACTCCCTTCTTGCGAACGTTCAAGCATCTTCATTGCTGGGCTTGGGCCCTAAGGAAACATGTAGCTTGCTTT GTCTTTTGGTAAGCAGGTGTATGGCTTTGGAAGAATGGAATGCCGTTGTTAAGTGCTCAAGAATGCTGGCTGCGGGAACATTGTTAGGTCCACATAAAGA AAAACAGATCAATTGGTATCTTGAGCCTTCGCACCTTGAGAAATTGCTCAATCAGTTGACCCCGCAACTTGATAAAATCTCCCAGATTATCAAACACTAT GCTTTATCTTCGATGGTTGTCATCCAAGACATGCTACGAGTCTTCATTATTCGGATTGCTTGCCAAAGGGTGGCCAATGCTTCTGTTCTTCTCCAGCCTA TCTTATCTTCCATCCGTGATCATCTTTCTGACTTTTCTTCTCTGTCAGAGATTGATACCTACAAGGTGTATAGGTACCTTGCATTTCTTGCTGGTGTACT AGAGCATCCACGTGCCAAGGTACTGTTATTGGAGGAAGGGATTGCTGATCTGTTAAGTGGGGTGTTGGAGAGGTGTTTTACTGCCATTTATTCCGATGGA TTTCAATTCTCAGAAAGCAAAAGTCTAGCAAAATTGGTGGCTTCTTTGACCATGTGGTGTGTTCCTGCATTCATGTCCATCTCCTTGCTTTGTGGTGCTG AAACTACTGTACTGTGCTCTGGACAGCTTGACTTCCGTGCAAGCTTGAGTTCTCAGCATTGGTCCCAGATTCTACCTTGTCTCTTGAAGTTCTGCCGGGT CTTGCCAGTTGGGAGAGAATTGCTGTCCTGTTTGATCAGTCTTAAAGACATAGGTAGTTGCAATGAAGGTCGTAGTGCTTTACTGACCTTTTGGAGCCGT GTCAATGGAAGCAGCAAGGATTTAGAATCACAAATTGGTGATGAAAGGAACAGTAATCACGAGGCTGGTGATTTTGAATGGAGCAAGAACCCTCCTTTGT TGTGTTGCTGGAGGAAATTGCTGAAGTCTGTTGATTCAATGGATGGATTGTCAACTTGTGCGGTGGAGGCTATTAATGCCTTGTCAGTTGGATCTTTGAG TTTCTGCGTGGAGGAAAAAAGTTTGAACTGCAATGCAGTGGCGGCAATAAAATACCTCTATGGGATTCCCAACGATTTGGATGAGATGGACAGCTCTTCG GAAGCTGTAACGGCCATAGAGGAAACGACTACGATGCTGAATTCAAAGATTACGAACAGCTACCATGCTTTAGAATCTGCCAACTCATTGTTGTTATTGT TGCAAAAGCCAAGTGGTTCAGTTACATTAGATGAAATTGGGTTTAGTAAGGATGTTTTGCTCTCAAATGACATACTTGCTTGTTCAACCGTAAATACTGA GGAAATGAATGATGATTATGATCAGCTTGGAGGTCTTGGAGATAAGTTTCTGTGGGAATGCCCAGAAACAATGCCAGACAGATTATCACAAAATCTTTCT GCAAAGCGGAAACTGTCATCTGTGGACAGTTCTGGCAAGCGAGTGAAGGGTGAAAACTCAGTGGTTGAAATCACAGGACAAAATTCAATATGTCGAGGGA TGGGTCCATCTACTGTCTCGACTGGACCCATGCGCAGGGACACGTTCAGGCAGCGGAAACCAAATACTAGTCGGCCTCCATCCATGCATGTTGACGACTA TGTTGCTAGAGAAAGAAGTGTTGATGGTGGAGGTAATTCAAGCGTTATTGCTGTCCAGAGAATAGGATCTGGCGGTGGGCGGCCTCCTTCAATTCACGTG GACGAATTCATGGCTAGAGAAAGAGAGCGACAGAATCCAATGGCTGCAATAGTCGGAGAGCCGTCACAAGTTAAATCTACTACTGTGGTTAGTGATGTTG ATAAGGAGAAGACCAACAAGTCTAAGCCGTTAAAAACAGATATGGATGATGATCTTCATGGTATAGATATAGTCTTTGATGCCGAGGAATCTGAAACAGA TGATAAGTCGCTCTTCCCTCAACCTGACGATAATCTGCAGCAGCCTGCTCCAGTCATGCTTGGGCAAAGCTCTCCTCAATCAATTGTTGAAGAGACAGGG AGTGACGTTAACCTCAGCCACCAGTTTGCTCGTGCAGATACTCCAGTGGCATCCAATGCTGACGAAAATGCACAAAGTGAGTTTTCTTCGCGCATGTCAG CTGCTCGGCCTGAAATGCCATTAACTCGAGAGCCAAGTGTTACTTCGGATAAGAAGTTCTACGATCAATCTGATGATTTGAAGAATGGTTTTCCAAGTAA ACCATCCGTGGGATTTGATTCTGTTACTGGTGCTTCTGTCTATAATAGTGGTCCAGGATCATCCATGCATGTGCAATTGGATTCCAGAAGCACACCTCCG AATGTGTATATGAAGAATAGTCCTCGTAATGCACCAGGATCACGAGGAGGTTATGCCTTGCATCAACCACCTTTGCCTCCAATGCCACCGCCATCAACAG TATCACCTGTGATACATCAGAGCCCAAGTCGGTCGTCCCCCTTCTTGAAGCCATCAGCAGAGACTCAGCCAGATTATCCTCCTACTTACGTAAATAGTCC TGCATCCCACGGTTTACCAGATTCCAAGTATTCAAGGAGTTCTCCGAGTGGGTCTGCCGGGCGTCATCCACCGCTTCCTCCAACACCACCACCTTTCTCA GCTAGCTCTTATAGTCTGCCTTCAAATCCTCAGTCAGCATATTCCGAGTTCCAACAGACCTCTCATCCATCCATGATGGATCCCAGATTAGCAGCCAATC TATCTGCTTCAGCAGCTGCTGGCCTAACTTCTTACCCACCTCCTCAAATGATGCCACCATTGGGTTTGAGTAGGCCAAGTCAGCAACCAGGTGATACCCA GAGTATGCTCCCCATGATGCAGCAGTCAATGCATCAGTTGCAGCCTCTCCAGCCGCCACTTCAACGCCCTTCACAAGCCCATTTCTGGCAGCCATCCCAA CAGCAGCAGCAGCTAGAACAAAACTCTTTCCAGGTTCCAGTTCATCAATTGCAAATGCTGCAACAGCCTCAACAAATGCCCAGCATGCACCCTCACTATC AAGCTCAACAGAAGCAGCAGCAGCAACAACCTCAATTCGAGCATGTACGTCAATCTCAAGGGGATGTATCTTCTTCCTCCCAGCAGCAACGAGATCTCGG GATGTCGTCCTTACAAGACTACTTCAAAGATCCCCAGGCCATCACGGCTCTGTTGAGTAACAAGGAGGAGCTATGCCGGCTTTTTGAGCAGCACCCGAAA TTGATGCAGATGCTTCAGGAGAGATTGGGGCAGCAATAA
AA sequence Show only first row Show all	>Lus10021265 pacid=23178256 polypeptide=Lus10021265 locus=Lus10021265.g ID=Lus10021265.BGIv1.0 annot-version=v1.0 MGRPEPCVLFSQTFVHPQLDEYVDEVLFGEPVVITACEFLEQNAPSASQVVSLVGATAPPSFALEVFVQSEGETRFRRLCQPFLYSHSSSNVLEVEAVVT NHLVVRGSYRSLTLVIYGNMAEDLGQFNIEFDDNSLTNLVTSAEGKLEDLPVALHSGSRAIEESLISLKVLSLPVVDLDLSTEVKQFLQLTSKMLEMPLL EESVYKVVSTIVTAVCSHVTHDSCREILGGKNSKPSGSNESEEFSHIITEAKKELLGVLQSSGNDMAHVLVDGSFLESEDDLATSKELVEMFRPHLCFDK NSSQPHELLQNENFLGLCVGFLLCSGRESCFHFVNQGGIEQLAHFFSHEIPNSSAVVLLLLGVIERATRHPIGCEGILGWWPREDENVPTGFSKGYSQLL KLFLEKPRHDVASLATYILHRLRVYEVASRYESAVLSALAGLSADETVTNHMESILDCVKFQLKKLLKLINSLGPIEDPSPVAHASRSLILGQTEGQLSY KATSSLIDSSDCPFLNCDLDSHLLGLLKERGFLPLSAALLSSPLLRSDAGEAMGTFAEIASTIGAILLSLLMRRSGLLFLSNHPEVSTVLIEALRNTNGM RIEESLPLRYASILSAKGFVCGPREVGTIIETHLRVVNAIDRLLLLTPHTEEFLWVLWELCGLSRSDCGRQALLALGCFPEVISTLIEALHAVKETEPDA KGGGASPIDVAIFHSAAEIFEVIVTDSTASSLKSWIGHVMELYKALHSSSPGSNRKDAPTRLLDWIDAGVVYHKNGAIGLLRYSAALASGGDTHLTSAST LVSDLTDVENVVSDASGGPDIYVLENLAKMASEKTFEGVTLRDSAIPQLTTAIRIMAFISENSTVAAILYDEGALTVIYAIVVNCSFMLEKSSNIYDYLV DEGAEGNSTSDLLLERNREQSLVDLLVPSLLLLITLLQKLQEAKEQHRNTKLMNALLRLHREVSPKLAACTADLSSSYPDSALGFGAVCHLTVSALSFWP VYGWTPGLFHSLLANVQASSLLGLGPKETCSLLCLLVSRCMALEEWNAVVKCSRMLAAGTLLGPHKEKQINWYLEPSHLEKLLNQLTPQLDKISQIIKHY ALSSMVVIQDMLRVFIIRIACQRVANASVLLQPILSSIRDHLSDFSSLSEIDTYKVYRYLAFLAGVLEHPRAKVLLLEEGIADLLSGVLERCFTAIYSDG FQFSESKSLAKLVASLTMWCVPAFMSISLLCGAETTVLCSGQLDFRASLSSQHWSQILPCLLKFCRVLPVGRELLSCLISLKDIGSCNEGRSALLTFWSR VNGSSKDLESQIGDERNSNHEAGDFEWSKNPPLLCCWRKLLKSVDSMDGLSTCAVEAINALSVGSLSFCVEEKSLNCNAVAAIKYLYGIPNDLDEMDSSS EAVTAIEETTTMLNSKITNSYHALESANSLLLLLQKPSGSVTLDEIGFSKDVLLSNDILACSTVNTEEMNDDYDQLGGLGDKFLWECPETMPDRLSQNLS AKRKLSSVDSSGKRVKGENSVVEITGQNSICRGMGPSTVSTGPMRRDTFRQRKPNTSRPPSMHVDDYVARERSVDGGGNSSVIAVQRIGSGGGRPPSIHV DEFMARERERQNPMAAIVGEPSQVKSTTVVSDVDKEKTNKSKPLKTDMDDDLHGIDIVFDAEESETDDKSLFPQPDDNLQQPAPVMLGQSSPQSIVEETG SDVNLSHQFARADTPVASNADENAQSEFSSRMSAARPEMPLTREPSVTSDKKFYDQSDDLKNGFPSKPSVGFDSVTGASVYNSGPGSSMHVQLDSRSTPP NVYMKNSPRNAPGSRGGYALHQPPLPPMPPPSTVSPVIHQSPSRSSPFLKPSAETQPDYPPTYVNSPASHGLPDSKYSRSSPSGSAGRHPPLPPTPPPFS ASSYSLPSNPQSAYSEFQQTSHPSMMDPRLAANLSASAAAGLTSYPPPQMMPPLGLSRPSQQPGDTQSMLPMMQQSMHQLQPLQPPLQRPSQAHFWQPSQ QQQQLEQNSFQVPVHQLQMLQQPQQMPSMHPHYQAQQKQQQQQPQFEHVRQSQGDVSSSSQQQRDLGMSSLQDYFKDPQAITALLSNKEELCRLFEQHPK LMQMLQERLGQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	0	1
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	1.4	0.9594
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	1.4	0.9538
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	2.2	0.9362
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	3.5	0.9459
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	4.0	0.9206
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	4.5	0.9368
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	4.9	0.9325
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	5.2	0.8983
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	6.0	0.9191
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	7.1	0.9160

Compare expression of checked genes

Lus10021265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.