Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52440 97 / 1e-23 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT1G21340 96 / 4e-23 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 89 / 2e-20 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 89 / 4e-20 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT3G45610 87 / 6e-20 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 86 / 1e-19 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 85 / 2e-19 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT4G24060 87 / 3e-19 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 86 / 4e-19 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 85 / 6e-19 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013586 [exp] 191 / 2e-59 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 95 / 9e-23 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10029767 [exp] 94 / 4e-22 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10035504 [exp] 85 / 5e-20 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10027797 [exp] 86 / 9e-20 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1) Lus10017313 [exp] 86 / 4e-19 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10007774 [exp] 86 / 5e-19 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10003207 [exp] 86 / 5e-19 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 86 / 6e-19 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070700 [exp] 97 / 5e-23 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G202500 [exp] 95 / 2e-22 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G188900 [exp] 94 / 5e-22 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 93 / 1e-21 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 86 / 4e-19 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 86 / 4e-19 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 86 / 4e-19 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 85 / 4e-19 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.011G055600 [exp] 86 / 9e-19 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 86 / 9e-19 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10021266 pacid=23178296 polypeptide=Lus10021266 locus=Lus10021266.g ID=Lus10021266.BGIv1.0 annot-version=v1.0 ATGGAGATCGGAGCTGCTGCTGATGGCGGAGGAATGTTTTGGAGGGAGCCGCCGCCGCCTCTAACTACTAGTAGTAACAATAATATTGGAGGCGCCGTCG AAAGGACGACGCCAAGCTGTCCAAGATGCGGATCCTCAAACACAAAGTTTTGCTACTACAACAATTACAGCCTCTCCCAGCCTCGTTACTTCTGCAAAGG CTGCCGCCGTTACTGGACCAAAGGCGGGTGCCTCCGTCACCGCTCTATCGGTGGGCTGTCGGGGGGAGGTTCCCCCCCCCCCACCCACCACAACAACAAT AACAACAAGTCCTCCTCCTCCTCCTCCTCCTTTAAAATATCTTCTTCACGCCGCCTTTCTCACGACAAGACTACTACTGCTACTTATACCGCTGCACCTC CAGATCAGCATCATCAGCACGGGTCCCACATCGACCTGGCCACCGTCTACGCCAAGTTCTTGAATAGTACTAACGGCGCTAACGACGATACACTACTTCC TAGTACTAATAACCCTATGGAAGGCGCATCATCTTCGTCAGCCGCCACGTCATCATCCGCCGCCGCAGCTGCTCCTTCTGCCACGTCATTGTTCTCCTCA TCTATGATGGCCGTCGACCTGCCACTACTACATCTTCCACCTGGCAGCGGCGGCGGAGATGATCAACTGATGATGTACTACTGTGGTGGCGGTGGTTTGA ATAATAACTACGAGCTTCCGCTATTGCCGGGAGAAGAGGATATTTTCCAGCTGCATCCTCCACGTCATCAAGTAGTTGGAACTCAGAATTATCATGATCA ACAACAACAACGAGATCCTATTCCTGATGATGATGATGATGATAGCAATGATCATGATCTAATGATGTTTGGGAACTACTGGAGTAGTTTCGAGCTATCT AATGTCACAAGATGA
AA sequence Show only first row Show all	>Lus10021266 pacid=23178296 polypeptide=Lus10021266 locus=Lus10021266.g ID=Lus10021266.BGIv1.0 annot-version=v1.0 MEIGAAADGGGMFWREPPPPLTTSSNNNIGGAVERTTPSCPRCGSSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGCLRHRSIGGLSGGGSPPPTHHNNN NNKSSSSSSSFKISSSRRLSHDKTTTATYTAAPPDQHHQHGSHIDLATVYAKFLNSTNGANDDTLLPSTNNPMEGASSSSAATSSSAAAAAPSATSLFSS SMMAVDLPLLHLPPGSGGGDDQLMMYYCGGGGLNNNYELPLLPGEEDIFQLHPPRHQVVGTQNYHDQQQQRDPIPDDDDDDSNDHDLMMFGNYWSSFELS NVTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10021266 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	9.7	0.9197
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	10.8	0.9090
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	15.8	0.9080
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	16.2	0.9121
AT1G75717			unknown protein		Lus10033147 [exp]	16.3	0.8770
AT1G49230			RING/U-box superfamily protein...		Lus10020859 [exp]	21.5	0.9038
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	23.1	0.8351
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	28.1	0.9003
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	28.7	0.9088
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	28.8	0.8579

Compare expression of checked genes

Lus10021266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.