Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35930 474 / 5e-167 PUB23 plant U-box 23 (.1) AT3G52450 462 / 1e-161 PUB22 plant U-box 22 (.1) AT3G11840 255 / 2e-80 PUB24 plant U-box 24 (.1) AT3G19380 200 / 7e-60 PUB25 plant U-box 25 (.1) AT1G49780 179 / 1e-51 PUB26 plant U-box 26 (.1) AT5G37490 157 / 2e-43 ARM repeat superfamily protein (.1) AT1G66160 156 / 4e-43 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G23030 142 / 7e-37 PUB11 ARM repeat superfamily protein (.1) AT5G09800 125 / 4e-32 ARM repeat superfamily protein (.1) AT1G71020 126 / 8e-32 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013584 [exp] 814 / 0 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 587 / 0 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 583 / 0 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10004191 [exp] 298 / 4e-95 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 278 / 2e-89 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10000800 [exp] 270 / 7e-87 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 263 / 7e-84 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004095 [exp] 253 / 7e-83 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 243 / 1e-78 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069400 [exp] 536 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 536 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 508 / 6e-180 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 486 / 2e-171 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016100 [exp] 335 / 3e-112 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 334 / 7e-112 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 322 / 3e-107 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 311 / 4e-103 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.002G174500 [exp] 278 / 1e-89 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 270 / 6e-87 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10021267 pacid=23178212 polypeptide=Lus10021267 locus=Lus10021267.g ID=Lus10021267.BGIv1.0 annot-version=v1.0 ATGGATGAGATCGACGTCCCTCATTACTTCCTCTGCCCGATCTCCCTCCAGTTAATGAAGGACCCCGTCACCCTCCCCACCGGCATCACTTACGACCGTG ACAGCATCGAGCGGTGGCTATTCGTCAACCACAACAAAACATGTCCGGTTACTAAACAACCCATCGACGACTGCTCCGTCGACGGGGCCACCGCCGCCCT CACTCCCAACGTCATCCTCCGCCGCCTCATTCAGTCATGGTGCACCCTCAATGCCTCCCACGGCTTCGAGCGTATTCCTACTCCTAAGCCTCCCGTCACC CGCTCCCAAATCTCTAAGATCGTGAAAGCGGGGATGAACTCGTCCCCGCAGAAGCAGATCAGCTGCATCAAGCAGCTGAAGTCGCTCGCGAAAGAGAGCG ACGCCAACAAGCGATGCATCGAGTCGGCAGGAGCCGTCGATTTCCTTGCCTCTGTCGTCGTCGCAAATTCGGACTTTATCGCTCAATTCGAGGATGGGAG CCCGTCTGAGGAGGCCTTGAGCCTTCTGCACGGACTCAAAATCTCTGAGCCCGCGCTCAAGGCTATGGTCAATAAAAATAATAACGAGTTTGTTGACTCT TTGACCAGAGTCATGCAGCGGGGTACTTACGAGTCTAGAGCCTACGCAGTTCTGATTTCGAGATCGATTTTCGAAGTGGCCGACCCGTTCCGGATAATCG GGTTAAAAACCGATTTCTTCATCGAGTTGGTTCAGGTGGTTAAGGATCAAATCTCGAAGCAAGCCTCCAAGGCAGCATTGACTCTATTGGTGGAGCTTTG TCCCTGGGGGAGGAACAGGATCAAGGCCGTGGAAGCCGGTGCGGTTTCTGTCCTGATCGACCTCCTCCTCGATTCGGGGGAGAGGCGGCCATGCGAGATG GCATTGGCAGCGATCGACGTGTTGTGCCAGTGTGCAGAAGGGAGGGCGGAGTTTCTTAAACACGCCGCTGGAATGGCGGTGGTTTCAAAGAAGATACTGC GAGTTTCGACCGCCGCAACAGAGAAGGCGGTGAGGATCCTGCTGTCGATCGGGAAGTCGTCGGCGACTCCGGCAGTGGTGCAGGAGATGCTACAAATCGG GGTGGTAGCGAAGCTGTGCTTAGTGCTGCAAGTAGAGAGTAGCCTAAGGGCTAAGGAGAAGGCGACGGAAGTGTTGAGGCTGCATGCTAGAGTTTGGAAG AACTCCCCATGCATACCCGCGAGTTTGCTCTGTTCTTATCCGGCTAGAGACTGA
AA sequence Show only first row Show all	>Lus10021267 pacid=23178212 polypeptide=Lus10021267 locus=Lus10021267.g ID=Lus10021267.BGIv1.0 annot-version=v1.0 MDEIDVPHYFLCPISLQLMKDPVTLPTGITYDRDSIERWLFVNHNKTCPVTKQPIDDCSVDGATAALTPNVILRRLIQSWCTLNASHGFERIPTPKPPVT RSQISKIVKAGMNSSPQKQISCIKQLKSLAKESDANKRCIESAGAVDFLASVVVANSDFIAQFEDGSPSEEALSLLHGLKISEPALKAMVNKNNNEFVDS LTRVMQRGTYESRAYAVLISRSIFEVADPFRIIGLKTDFFIELVQVVKDQISKQASKAALTLLVELCPWGRNRIKAVEAGAVSVLIDLLLDSGERRPCEM ALAAIDVLCQCAEGRAEFLKHAAGMAVVSKKILRVSTAATEKAVRILLSIGKSSATPAVVQEMLQIGVVAKLCLVLQVESSLRAKEKATEVLRLHARVWK NSPCIPASLLCSYPARD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	0	1
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	1.0	0.9767
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	3.7	0.9735
					Lus10006423 [exp]	5.5	0.9684
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	7.1	0.9564
AT3G03280			unknown protein		Lus10007960 [exp]	8.5	0.9486
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	8.5	0.9630
AT5G28950			unknown protein		Lus10025132 [exp]	8.8	0.9622
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	10.4	0.9537
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	10.4	0.9658
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	11.0	0.9614

Compare expression of checked genes

Lus10021267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.