Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 788 / 0 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 115 / 5e-26 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT2G27170 69 / 9e-12 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G47460 51 / 4e-06 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 50 / 9e-06 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT5G61460 46 / 0.0001 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022923 [exp] 1088 / 0 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 1087 / 0 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013582 [exp] 402 / 2e-135 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 188 / 5e-56 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10030681 [exp] 114 / 2e-25 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 112 / 6e-25 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10036169 [exp] 63 / 1e-09 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10017012 [exp] 57 / 2e-08 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10027215 [exp] 53 / 1e-06 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 883 / 0 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 113 / 2e-25 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.009G155200 [exp] 67 / 5e-11 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 56 / 1e-07 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 56 / 2e-07 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G262600 [exp] 45 / 0.0003 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10021268 pacid=23178300 polypeptide=Lus10021268 locus=Lus10021268.g ID=Lus10021268.BGIv1.0 annot-version=v1.0 ATGAAGCGGTTAAGTTCGAAAATTAAGATCACCGGTAAGGACCTTGATAGGAGAAGAGAAGAAGGGAAGAAAATTACAGGTGTGATACAAAAGTTACAGA GTGGCATACAGGATCTATCGGCAAAACTGAAGGATCTGAATGAGCGAAGCGAAAAGCTTCCTGTACTGGCTGATAGTCAACTGAAGGAATACAATAAAAT CAAAGAAAATGCAGGGGTGAAAACCAGCAGGCTGAGTGATGAAAAGGAGGTCTTGGACAGACAACATCATGCTGATATGGAAGCTCTGAAAAATATGGAA GAGAATCTTCAACAGTTGAGAAATCGTACGCAGGAACTGAATTCACAGGAGGAGGAAACACGAGCAAGACTCGAAAAGATTCTCGACACTTGTGCTAAAC AGAAAGAAGAGGTGTCAGGGTTGAAAAGGGAATTGGGTATGATACAAGATAAACATCAGGATACCAAGAGTAAGCAGCTAAACTTGAAGTCCAAAATCGG AGAAATAGACAAGCAATTGCGCGAACTGAAAGCTGATAGATTCGAGAATCAGAGGGACAATCGGTTGTCCGAAACAGCGGAGACTCTCAAACGACTCTTC CAGGGAGTTCATGGACGCATGACTGACCTTTGTAGACCAAAGCATGAGAAATATAATGTGGCCATCACTGTAGCCATGGAAGATTCATGGATGCTGTGGT GGTTGAGGATGAAAATACAGGAAAAGAATGTATCGAACTTGAAACATCAGAGGCTTCCTCGTATGACCTTTATACCGCTAGAGTCGATTCGTATAAAGCC AATCCCTGAATGGATGCGTACTTTAGGGGGTACATCAAAGCTCGTCAAAGACGTCATCGAATTTGATCCTATGGTGGAGAAGGCTATAATTTACGCTGTT GGAAGTACTATGGTATGTGATGATCTTGATGACGCAAAGAAACTTGGATGGGATGATGGCAATGGAGAGAGAATTAGAGTTGTAACTGTCGACGGGACTC TCCTTACCAAGTCTGGAACAATGACTGGTGGTACTAGCGGTGGGATTGAAGCTAGATCAAGACAGTGGAATGATCAAAAGGTTGAAGGGTTGAAGAAGAA GAAAGAAGAATTTGAGTCTGAATTAGAGGAGCTAGGGTCACTTGGAGAAATTCAGTTGAGAGAGTGTGAAGCATCTGGCAGGATCAGCGGTCTTGAAGAG AAAATCCAGTATGCAGAAATTGAGAAGAAATGTATTGAGGAGAAGCTTAACAAGTTGGAACATGAGAAGAAAACAATCAAAGAAGACATCAGTGGTCTGA GTCCAGGTTTTCATAAGTTGAAAGATGCTATTGAAAAGAGAGGCGATTCCATTAGCACGGTGGAGGTTAGTATAAACGAGGTTGTTGATTGGATTTTCGA AGATTTCAGCAGGAGTGTAGGTGTGGCGGATATACGCGAATACGAAGAGAATCATCTCAAGGCTGCAAAGAATGTAGCTGAGGAAAAGCTTAGTTTAAGC AACCAGTTGTGGAAGTTGAATTCCCAATTGGAGTATGAGCAAAAGCGGGATGCTGCAGGTGCGAGGATCAGAAAGGTGGAGTCTTGTCTGAATACTATAA AGAATGAACTGAAAGTTTCTCAGAAAAAAGAGGAAGAATTGAAGTCAACTGTAGAGAAAGCAACAAGTGAGATTGATACATGGAATGAAGAATTGCAAGG GTGGAAATCCAAAGCAGAAGACTGTGACAAGGAAATTCAAAAATGGAAGAAGCAAGCGTCAGATGCTACAACCAAAATTTCAAAGCTTAACCGTACGATA AGCTCCAAGAAGGGACAGATTGAGCAGCTCTTATCTCGCAAGCAAAATATAGTGGAAAAGGGTGAATTGGAGCATATAAGCCTGGAGGAGATTGATGATT CTGTAGTTGCAAGCCTGGAGAAAACAGATGAGGAATTTAAGAAGAATATAGAAGCAAACACATCTGAAATTGAAAAAACTGCTCCGAACTTGAAGGCACT AGAGCAGTATAAAGCCTTGTTGGAGATGGAAAGAAAAATATCTGCAGAGTTTGACATAGCCTATAAGGAGGAGAGGCAGATTTACAAGCGGTTAACAAAG AGCAAGACGCATCCTCTTGGCGGGACAGCATACCTGAAGCTGGAGAATGAAGATGAACCGTATTTACAGGGGATCAAGTTCACAGCCATGCCACCAACGA AACGATTCCGAGATATGGAACAGCTCTCAGGCGGTGAGAAAACAGTTGCGGCACTTGCTTTCCTTTTTGCTATCCACAGCTATAGCCCCTCGCCGTTTTT CATATTGGATGAAGTCGACGCTGCGCTGGATAACTTGAACGTTGCTAAAGTTGCTGGCTTCATTAGCGAGAATGGAGCAAGTGGTTTCCAGAGCATTGTG ATATCTCTGAAAGATAGATTTTACGACAAGGCTGAAGCTTTGATCGGGGTTTATAGAGATGCCGATCGAGGGTAA
AA sequence Show only first row Show all	>Lus10021268 pacid=23178300 polypeptide=Lus10021268 locus=Lus10021268.g ID=Lus10021268.BGIv1.0 annot-version=v1.0 MKRLSSKIKITGKDLDRRREEGKKITGVIQKLQSGIQDLSAKLKDLNERSEKLPVLADSQLKEYNKIKENAGVKTSRLSDEKEVLDRQHHADMEALKNME ENLQQLRNRTQELNSQEEETRARLEKILDTCAKQKEEVSGLKRELGMIQDKHQDTKSKQLNLKSKIGEIDKQLRELKADRFENQRDNRLSETAETLKRLF QGVHGRMTDLCRPKHEKYNVAITVAMEDSWMLWWLRMKIQEKNVSNLKHQRLPRMTFIPLESIRIKPIPEWMRTLGGTSKLVKDVIEFDPMVEKAIIYAV GSTMVCDDLDDAKKLGWDDGNGERIRVVTVDGTLLTKSGTMTGGTSGGIEARSRQWNDQKVEGLKKKKEEFESELEELGSLGEIQLRECEASGRISGLEE KIQYAEIEKKCIEEKLNKLEHEKKTIKEDISGLSPGFHKLKDAIEKRGDSISTVEVSINEVVDWIFEDFSRSVGVADIREYEENHLKAAKNVAEEKLSLS NQLWKLNSQLEYEQKRDAAGARIRKVESCLNTIKNELKVSQKKEEELKSTVEKATSEIDTWNEELQGWKSKAEDCDKEIQKWKKQASDATTKISKLNRTI SSKKGQIEQLLSRKQNIVEKGELEHISLEEIDDSVVASLEKTDEEFKKNIEANTSEIEKTAPNLKALEQYKALLEMERKISAEFDIAYKEERQIYKRLTK SKTHPLGGTAYLKLENEDEPYLQGIKFTAMPPTKRFRDMEQLSGGEKTVAALAFLFAIHSYSPSPFFILDEVDAALDNLNVAKVAGFISENGASGFQSIV ISLKDRFYDKAEALIGVYRDADRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10021268 [exp]	0	1
					Lus10040954 [exp]	16.3	0.8603
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027353 [exp]	45.2	0.8362
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	45.3	0.8424
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	63.6	0.8414
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	72.2	0.8400
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	72.2	0.8377
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	75.0	0.8277
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10012410 [exp]	88.5	0.8252
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	109.7	0.8245
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	110.9	0.8112

Compare expression of checked genes

Lus10021268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.