Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 412 / 9e-142 BTB/POZ domain-containing protein (.1.2) AT4G10800 157 / 2e-44 unknown protein AT1G63850 66 / 3e-11 BTB/POZ domain-containing protein (.1) AT3G50780 64 / 1e-10 unknown protein AT2G13690 49 / 3e-06 PRLI-interacting factor, putative (.1) AT5G60050 45 / 0.0001 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013580 [exp] 807 / 0 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10033220 [exp] 273 / 2e-87 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10023030 [exp] 269 / 1e-85 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2) Lus10023573 [exp] 78 / 4e-15 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10040458 [exp] 76 / 2e-14 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 66 / 2e-11 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 63 / 2e-10 AT3G50780 602 / 0.0 unknown protein Lus10024658 [exp] 57 / 2e-08 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 55 / 7e-08 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202900 [exp] 482 / 3e-169 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 292 / 6e-95 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.003G144700 [exp] 177 / 3e-52 AT4G10800 265 / 2e-88 unknown protein Potri.016G069566 [exp] 84 / 1e-19 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2) Potri.004G154600 [exp] 76 / 1e-14 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 70 / 2e-12 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 67 / 1e-11 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 61 / 7e-10 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 60 / 1e-09 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 59 / 3e-09 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021269 pacid=23178157 polypeptide=Lus10021269 locus=Lus10021269.g ID=Lus10021269.BGIv1.0 annot-version=v1.0 ATGCAGGGAATTGGTAACATCGGCGACCGATTAACTAGTGATCTTGTCGTCAGGCTACGGACAGATAGTGGCAGAGACGAGTGGCTTTACTGTCACTCTA CTGTCCTAATAGAGAAATGCAAGTATTTTGCCGACCGCCTTTCAGAGAGTTGGCCAACTTTGCAGATCATTGACTCGCGGAACTGTGTTGATGTCTTCTG CCAAGACTCAGATATCGATCATTATGTCAATCTCCACCGCCTACTATATCTAGGTACAGATGACCCATTGGAGTGCCTTCCCCATGGTGTGGGGAACGTG CTTGGCATTCTACAGGTGGCAGTTAAGCTTGGCTGCAATAAGTTTGTTCCTGCTTGCGTGCAGTACTTGGAAGCAGTCCCATGGGAGGAAGCCGACGAAG ATGCAATCTTAAAGATCGTACCAGGAATTGGATCACAAGCAGAAGCAATTCTTTGTCGTCTCCAGCCAGTCGATAAATCAAAACTGGAAAGGATATTTTT GTCAGCTGTTCAGTTTGCCACATCGTCGCCTGCTCTGGACTTGAATCATGTCAAAGCTTCTGCGCAGGATCAGATTGAGTACATGCTAACAGAGGAAGAC GATGATGAACCTCTTTTGACTCCTGATGATGAGATTGCATCTGTCCTGAGAGATTCTATGCATGGATTGTTCTCAGAATTCGGCAATAGGTTTGATTCCT TGCTACAAATGCCATTGCAGGCAATTTCAGAGACAAATGAGATGAAACTGTTGGAGTCACATCTTTCAGATCTTGCTTGGGCTTTTCAAATATTAAACAA GTTGGAAATGATGCCGGAATTCGTCAGACATTGGGTGGATGTGTCAGATAAGGTCCTTGAGATATTTGAGCGGCTGAAATCCGAAGATGGGATATTAGAG GCGAGTTTGAAGGCCATCGAGGTGTCTACAAAGGTCTTAGAAGCAATGTCGTACGGAACTGTCATATTACCTACTCAGAAACGACTTCACATCGTGAAGA TATGGCTTCCATTCGCAAGGGAAACGAGAAACACAACCGATAACGCCACCATGGAGAATCAGAAGGTTAAACTGGATGGTGAAGTGTGGCAGACACTGGA ATCTTCATTTGTGTCTATAGTTCAGGGACTGCCGTCAGAAGATCAAGCAGAGATCATAGTCGAATGGCTATCAAGTGCACACATTCAGTATCCAGATTTG AGAGAGGCATTCGAGATGTGGTGTCTCAGAGCTAGGATGGCTAAGAAAAGGTTTGGAAGTAAAAGTGGGAATCCTAGTGATGGAGTTTCTGGCCAAGTGA GCATGGATGATGCACTTGTCTGA
AA sequence Show only first row Show all	>Lus10021269 pacid=23178157 polypeptide=Lus10021269 locus=Lus10021269.g ID=Lus10021269.BGIv1.0 annot-version=v1.0 MQGIGNIGDRLTSDLVVRLRTDSGRDEWLYCHSTVLIEKCKYFADRLSESWPTLQIIDSRNCVDVFCQDSDIDHYVNLHRLLYLGTDDPLECLPHGVGNV LGILQVAVKLGCNKFVPACVQYLEAVPWEEADEDAILKIVPGIGSQAEAILCRLQPVDKSKLERIFLSAVQFATSSPALDLNHVKASAQDQIEYMLTEED DDEPLLTPDDEIASVLRDSMHGLFSEFGNRFDSLLQMPLQAISETNEMKLLESHLSDLAWAFQILNKLEMMPEFVRHWVDVSDKVLEIFERLKSEDGILE ASLKAIEVSTKVLEAMSYGTVILPTQKRLHIVKIWLPFARETRNTTDNATMENQKVKLDGEVWQTLESSFVSIVQGLPSEDQAEIIVEWLSSAHIQYPDL REAFEMWCLRARMAKKRFGSKSGNPSDGVSGQVSMDDALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	0	1
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	3.2	0.8058
AT2G21195			unknown protein		Lus10041068 [exp]	5.2	0.7701
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	8.8	0.7581
AT3G61370			Protein of unknown function (D...		Lus10027936 [exp]	13.7	0.7901
AT1G55170			unknown protein		Lus10041450 [exp]	15.7	0.7641
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	16.2	0.8143
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10021679 [exp]	21.7	0.7848
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	22.8	0.7828
AT5G62980		FOLB2	Dihydroneopterin aldolase (.1)		Lus10021252 [exp]	25.2	0.7947
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	28.0	0.8025

Compare expression of checked genes

Lus10021269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.