Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 226 / 1e-64 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G19700 150 / 9e-39 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G16400 149 / 1e-38 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G27220 136 / 2e-34 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT5G41410 137 / 1e-33 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT4G34610 135 / 1e-33 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT4G36870 131 / 9e-32 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G27990 130 / 2e-31 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT2G23760 127 / 1e-30 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT1G75410 126 / 1e-30 HD BLH3 BEL1-like homeodomain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013579 [exp] 226 / 5e-98 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 158 / 1e-40 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 154 / 3e-39 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 149 / 8e-38 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 147 / 3e-37 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 141 / 7e-36 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 141 / 7e-35 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022599 [exp] 136 / 2e-33 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10033192 [exp] 135 / 3e-33 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G017400 [exp] 258 / 6e-76 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 162 / 7e-42 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 157 / 2e-40 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.003G131300 [exp] 141 / 4e-35 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 140 / 7e-35 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.002G031000 [exp] 139 / 3e-34 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.007G032700 [exp] 139 / 5e-34 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 137 / 2e-33 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G213300 [exp] 132 / 8e-32 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 130 / 2e-31 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10021270 pacid=23178221 polypeptide=Lus10021270 locus=Lus10021270.g ID=Lus10021270.BGIv1.0 annot-version=v1.0 ATGACGACATACTTCCATGGCGGCAACCCTGCTGAAATCCAAACTGAAGGTCTTCATACCCTCCTCCTTATGAACCCTACCTACGTCCACCACTACTCCG ACCACGACGTCAGCCCTCCTCCGCCACCTCACCACTTCTCCTCCAGCCATCTCACCGAGCACTCTGTCAGCGACGCTAAACAGCAGCAGTTCGTCGGCAT CCCTCTAGACCCCCACCACTACAACAGCCTTTACAGCCCTGTCGATCTCTCCTCCTCGGAGACGCGTGCTTCCCCACGCGCCTCCCACCACCACCACCAC CACCAGCAGGCTCTCTCTTTGACTCTCTCCTCCCACCAGCAGCACCGTCAGCAGCACCAGCAGGTTTCGTCGAGTTCTGGTGGAGTGACCGAGAATTGTG CTGCCGGCGTGGTCCCCACCGCTCCTGGCGTGCTGTTGAGCTCCAAGTACTTGAAAGCTGCTCAGGAATTGATCGACGAAGTCGTTAACGTCAACGTTAA CGGAGGAGCCATTAATGGCAAGACCGAAGCGTCAAAGAAAGGGAATACTAATAACGCCGTCAGTAAGGAGGCGGAGTCAGCTGCGTCCGGCGATGGGAAG ATATCGCCGGAGCTTACGACTGCGGAGAGGCAGGAGGTTCAGATGAGGAAAGGCAAGCTCATCAACATGCTTGATGAGGTATACGAGAACTGGATTTTCA TTTTGTGGAGCAGGTGTGTTCTGACAGGTGGAGCAGAGGTACAGGCAGTACAATCACCAGATGCAGGCGGTGATATCGGCGTTCGAGCAAGCGGCGGGGA CGGGATCGGCGAGGACCTACACGGAGCTAGCTTTGCAGACGATCTCGAGGCAGTTCCGATCGTTGAAAGACGCGATCGCCGGCCAAATCAAGGCGGCGAA CAAGAGCTTAGGGGAAGAGGAAACTCAGCGGAAAATGGAAGGTTCGAGGCTAAAATTCGTGGATCATCATCTCCGGCAGCAGCGGGCTCTTCAGCAGATT GGAATGATGCAGCACAACGCTTGGAGACCTCAGAGAGGCTTGACAGCGCTGGGATACCTAAGAGAGGCTTACTTGAGAGACCTGTCTCCGTCCTCCGCGC CTGGCTCTTCGAACACTTCCTCCACCCATATCCTAAGGATTCTGATAAGCATATGCTAGCCAAACAGACGGGACTCACCAGGAGCCAGGTCTCGAATTGG TTCATCAATGCTCGAGTTCGGCTGTGGAAGCCCATGGTGGAGGAAATGTACATTGAGGAAATGAAAGACAAGGATTCATCAGAGTTGGATCACAACAGAA GCAAGTTCGATCAGCAGAACGAAGATTCATCTTCCAAATCTGTGCCATTCCATGATCATAATACTAATTCAAGTATCGAGAACCAAGCCATCAACTGTTC ACCAAACCAGAATCAGAATGTGCCTTCTGGGTTCACAATCTCCCCCCAAGCTTTCTCCCTCACAGCATCATCAGAACTTGAAGGGATAACACAAGGCAGC CCCAAGAAACCAAGGAACCGCCACATCAACCTACCAAGCGTTCCATCGATGGATCAGTCGAGCAACAACAATCACAATTCAATTGAATTTGTGGACGAGA GGCAGAGCAGAGATATTGGGTACTCGTTCATGGGAGGACAGACAAACTTCATGGGAGGAGCATTTGGGCAGTACCCAATTGCAGAGATTGGTGCAAGGTT TGATGCAGACCAGTTCGCTCAGAGGTTCTCTGGCAATGGAGTCTCGCTAAGCCTCGGCCTCCCACATTGCGAAAACCTCAACTTATCAGCCAATCACCAC ACTTTTCTACCCAACCACAACATCCAGCCAGGGAGGAGACTTGAAATGGGAGATGCAAACGAGTTCGGAGCAATTAACGGGTCGGATCCACACTCGTCGA CAACAACATATGAGAGCATCAACATCCAGAACAGGAAAGGGTTTGTAGCAGCACAGCTATTGCCAGACTTTGTAACTTGA
AA sequence Show only first row Show all	>Lus10021270 pacid=23178221 polypeptide=Lus10021270 locus=Lus10021270.g ID=Lus10021270.BGIv1.0 annot-version=v1.0 MTTYFHGGNPAEIQTEGLHTLLLMNPTYVHHYSDHDVSPPPPPHHFSSSHLTEHSVSDAKQQQFVGIPLDPHHYNSLYSPVDLSSSETRASPRASHHHHH HQQALSLTLSSHQQHRQQHQQVSSSSGGVTENCAAGVVPTAPGVLLSSKYLKAAQELIDEVVNVNVNGGAINGKTEASKKGNTNNAVSKEAESAASGDGK ISPELTTAERQEVQMRKGKLINMLDEVYENWIFILWSRCVLTGGAEVQAVQSPDAGGDIGVRASGGDGIGEDLHGASFADDLEAVPIVERRDRRPNQGGE QELRGRGNSAENGRFEAKIRGSSSPAAAGSSADWNDAAQRLETSERLDSAGIPKRGLLERPVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNW FINARVRLWKPMVEEMYIEEMKDKDSSELDHNRSKFDQQNEDSSSKSVPFHDHNTNSSIENQAINCSPNQNQNVPSGFTISPQAFSLTASSELEGITQGS PKKPRNRHINLPSVPSMDQSSNNNHNSIEFVDERQSRDIGYSFMGGQTNFMGGAFGQYPIAEIGARFDADQFAQRFSGNGVSLSLGLPHCENLNLSANHH TFLPNHNIQPGRRLEMGDANEFGAINGSDPHSSTTTYESINIQNRKGFVAAQLLPDFVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	0	1
AT1G21065			unknown protein		Lus10016049 [exp]	3.0	0.9035
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	3.5	0.8755
AT1G61930			Protein of unknown function, D...		Lus10006775 [exp]	6.3	0.8689
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	6.6	0.8861
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	6.8	0.8488
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	8.9	0.8304
AT3G01860			unknown protein		Lus10041572 [exp]	8.9	0.8634
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	11.4	0.8815
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	11.5	0.8777
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	12.6	0.8585

Compare expression of checked genes

Lus10021270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.