Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11680 535 / 0 Aluminium activated malate transporter family protein (.1) AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) AT1G08430 436 / 1e-149 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 419 / 6e-143 Aluminium activated malate transporter family protein (.1) AT4G00910 347 / 8e-115 Aluminium activated malate transporter family protein (.1) AT4G17970 285 / 4e-90 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 279 / 7e-88 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 268 / 2e-83 Aluminium activated malate transporter family protein (.1) AT3G18440 227 / 2e-67 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 224 / 2e-66 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013577 [exp] 914 / 0 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 400 / 7e-136 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 393 / 2e-133 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 352 / 4e-117 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 351 / 4e-116 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 290 / 5e-92 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 276 / 6e-87 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 273 / 2e-85 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 238 / 6e-74 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070100 [exp] 611 / 0 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 610 / 0 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 596 / 0 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 525 / 0 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 500 / 5e-175 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 493 / 3e-172 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 470 / 4e-163 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 462 / 5e-160 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 448 / 2e-154 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 369 / 3e-123 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10021272 pacid=23178179 polypeptide=Lus10021272 locus=Lus10021272.g ID=Lus10021272.BGIv1.0 annot-version=v1.0 ATGGAGATTGATTCAGCAACCCACCAAGACAATCCAGGGCTTTTCGGCCGCAGTTGGTCCATGGTCAAGGACAAAGTCACCAGTGGCTCAAAGGGTGCCA TGAAAATTGGGCAAGATGATCCTAGAAGGATCATCCATTCCCTTAAAGTTGGACTGTCACTCACATTGGTTTCCTTACTCTACTACATTAGGCCATTGTA TGATGGGTTTGGAGTTGCAGGAATGTGGGCTGTGCTTACTGTTGTGGTCATCTCTGAGTTTACAGTTGGTGGAACTTTGTCCAAAGGGTTGAATAGAGGA TTTGCAACTCTGTTTGCTGGTGCTCTAGGAGTTGGAGCTCAGCACTTGGCTGCTTTGTCTGGACATAAAGGAGAGCCCTTTGTACTTGGAATCCTTGTTT TCCTATTAGCTTCAACATCCACATTCATGCGATTCTTCCCGAAGATCAAGGCGAGATACGACTACGGAGTCCTGATCTTCATCCTGACATTCGCCTTGGT CTCCGTATCCGGTTATCGAGTTGAGGAGATCATGACTCTAGCGGAGCAACGATTGGTGACAATCATAATTGGTGGAACAACCTGCATGGTTGTGTCCATT TGCATTTGTCCTGTATGGGCTGGAGAAGATCTTCACAAGTTGGTCTCTTCCAACATTGAAAAGCTTGGCTGCTACTTGGAAGGATTTGCAGGAGAATATT TTCAGTCCCCTGAAGATAGAGATATTACTGTTGCTGCTGTCAAGCCATTTCCTCAAGTTTACAAATCTGTCCTCACTTCCAAGTCTACTGAAGACACTTT GGCAAACCTTGCAAGGTGGGAGCCAAGGCATGGACAGTTTAGGTTGAAGCATCCATGGAAGCAGTACTTGAAGACTGCAGCACTTGCAAGGCAGTGTGCT TATCAGATTGAATCTCTTAATGGCTACATTAACTCTGGACTCCAGACACCAAAAGAGTTCCAGAACAAGATCAAGGAATCATGCACCAGGATGAGTGGAG AATCAGGGATGGCACTGAGATCACTAGCATCATCCATGAAGTCAATGACTGATCCATCTCCAGCAAATGTTCATGTCGAGAACTCGAAAGCTGCCATGAA CGACCTCAAAGTTGCTCTCAAAGCCGTCTCAATGGATCAAGCAGATTTCTTGGCAATTGTACCGGCTGCCACAGTTGCATCGATACTAGCTGAGACAGTG AAGTCTGTGGAGAAGCTAGCTGAATCTGTTCATGAGCTTGCTAATCTAGCACACTTCAAAAGCCTGAAAGCTACTGTATCACCAGAGACGAAACAGGCAC AATTGCTCCACAGAGGAAGTGTAAAGCCAGTTTTGGATGGTAATGATGCAGATCATGTTGTAATTACAGTCCTTGAAACTCCTGCAGAATCATTACAAAC TGTCGAGTCTAGTCATCAGCCAGTAAATGGTGTAGCTGGACAAATCTCTGAAGTGAAATAA
AA sequence Show only first row Show all	>Lus10021272 pacid=23178179 polypeptide=Lus10021272 locus=Lus10021272.g ID=Lus10021272.BGIv1.0 annot-version=v1.0 MEIDSATHQDNPGLFGRSWSMVKDKVTSGSKGAMKIGQDDPRRIIHSLKVGLSLTLVSLLYYIRPLYDGFGVAGMWAVLTVVVISEFTVGGTLSKGLNRG FATLFAGALGVGAQHLAALSGHKGEPFVLGILVFLLASTSTFMRFFPKIKARYDYGVLIFILTFALVSVSGYRVEEIMTLAEQRLVTIIIGGTTCMVVSI CICPVWAGEDLHKLVSSNIEKLGCYLEGFAGEYFQSPEDRDITVAAVKPFPQVYKSVLTSKSTEDTLANLARWEPRHGQFRLKHPWKQYLKTAALARQCA YQIESLNGYINSGLQTPKEFQNKIKESCTRMSGESGMALRSLASSMKSMTDPSPANVHVENSKAAMNDLKVALKAVSMDQADFLAIVPAATVASILAETV KSVEKLAESVHELANLAHFKSLKATVSPETKQAQLLHRGSVKPVLDGNDADHVVITVLETPAESLQTVESSHQPVNGVAGQISEVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	0	1
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	1.4	0.9442
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	2.4	0.9414
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	3.9	0.9219
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	4.0	0.9179
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	4.7	0.8834
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	4.9	0.9104
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	5.0	0.9110
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	5.2	0.9067
					Lus10015658 [exp]	6.3	0.9093
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	6.5	0.9104

Compare expression of checked genes

Lus10021272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.