Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 1070 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 541 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004200 [exp] 1126 / 0 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 920 / 0 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 642 / 0 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10040927 [exp] 516 / 3e-177 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10009820 [exp] 385 / 2e-126 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10029404 [exp] 320 / 4e-105 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 217 / 2e-66 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004199 [exp] 0 / 1 ND 42 / 2e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 1164 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 1140 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 519 / 5e-178 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10021273 pacid=23178238 polypeptide=Lus10021273 locus=Lus10021273.g ID=Lus10021273.BGIv1.0 annot-version=v1.0 ATGAGACCGCCCTTCACGATTCGTTCCTCCTCTTCCTCGTCGTCGACGGACGCATTTTCTTTCATCTCCAAAGGATGGCGGGAGGTCCGGGACTCGGCGG ACGCGGATCTCCAGCTGATGCGGGCGAGGGCCAAATCGTTCAAGAACCTGGCGTCTTCCTTCGACCGGGAGCTGGAGAACTTCTTCAGTTCCGCTGCCAC GCCGTCGGAGAGCGATTTCGTGAAGAGGATTCAGCCCAAGTTAACGGAGTTTCGGAGGGTGTACTCGGCTCCGGAGATTAGCAAGAAGGTCCTGGAGAAG TGGGGACCTACGAAGGCGAAGCTAGGGATTGATTTGTCGAGCATAAGGAATGCTTTAGTGTCCGAGGTGGAAGGGTATGATGGTGATGTGGGCAGGAGTG TCGAGTTTGATAGGGTGTGGAGAGGTAGGAGGAGGCTCAAGTTTAATGAGTTCTGGGGCGAATGGAAAGTTGAGGGGGAAGGGAGTCAGATTGAGGAGTG GAAACCGATTCGTGATTTGAAGAGGCGGTTTAAGGAGCTGGAGAAGAAGAGTGAATTGGGGGAGATTATTGAGGGTTTTAAGAATAGTGAGATTGTGGAG AAGGTCAAGTCCAGCTTGGAAGTACCCCCACTTGATGTACCAGAACTATTGGCAAGTTTGGTAAAACAATCTGGGCCTTTTCTGGATCAGCTTGGTGTCA GAAGAGATATATGTGACAAGATAGTGGACAGCTTATGTAGCAAACGCAAGAACCAACTTCTTTTGAACTCACTATCTACAGAAGAGTCCTCCCTCATTGG GGATGACAATGGGCACGATGACCTTGATTTGAGGATTGCCAGTGTCCTTCAAAGTACAGGGCATCATTATGATGGTGGATTCTGGACAGATCAAGCAAAA CATATCCCAGTAGATGGTACGAGGCATGTCGCTATTGTCACAACTGCTAGTCTTCCATGGATGACCGGAACAGCTGTCAATCCACTTTTCCGAGCAGCAT ATCTTGCACAATCAGAGAAACGAAACGTGACCTTGTTGGTTCCTTGGCTCTGCCAGTCAGATCAGGAACTTGTTTACCCGAGTAGTATCACTTTTGGTTC ACCTGAAGAGCAAGAGGGCTACATTCGCAACTGGCTTGAGGAGAGAATTGGCTTTAAGGCTGATTTTAGAATATCCTTCTATCCAGGAAAGTTCTCTAAA GAAAGGAGAAGCATAATCCCAGCGGGTGATACTTCTCAGTTTATACCATCAAAGGAAGCTGACATAGCCATTCTAGAAGAACCTGAACATCTAAACTGGT ATCATCATGGTAGGCGGTGGACTAATAAGTTCAATCATGTTGTTGGAGTTGTCCACACAAATTACCTGGAATATATCAAGAGGGAGAAGCATGGAGCTCT CCAAGCTTTCCTTGTTAAACACATAAACAATTGGGTTGCACGAGCATACTGCGATAAGGTTCTTCGTCTTTCTGCTGCTACACAGGATATGCCAAAGTCC GTAGTGTGTAATGTGCATGGTGTAAATCCTAAGTTTTTGCGAATAGGTGAAAAGGTTGCTGCAGACACGGAACTTGGACAGCATGCCTTCTCTAAAGGAG CCTACTTCTTGGGCAAGATGGTGTGGGCTAAGGGATACAGGGAGTTGATAGATCTGCTTGATAAACACAAGAGTGATCTTGATGGCTTCAAGTTGGATGT ATATGGAAATGGCGAGGATGCACACGAAGTTAAGAGTTCAGCTCAATCATTGAATTTAAATCTTAATTTCCTCAAAGGAATCGATCATGCCGATGATTCT CTCCACGGGTACAAAGTCTTCATAAATCCAAGTCTCAGCGATGTCCTATGCACAGCCACAGCCGAGGCACTAGCAATGGGGAAATTTGTTGTGTGTGCAG ACCATCCATCGAACGAGTTCTTCAGATCGTTCCCGAACTGTTTGACCTATAAAACACCCGAGGACTTTGTAGCAAAGGTGAAGGAAGCAATGGAGAAAGA ACCTCAACCTCTCACTCCAGAGCAAAGCTACAACCTCTCCTGGGAAGCTGCCACCCAGAGATTTATGCAGTACTCCGATCTCGACAAACTGCTGACCGAT GGCAAAGATGGTACGTTATCGAAAGATAGCAGGATGATAAAAGCCGGTCCAGTGCCAAATATCTCCGAGGTACTGGATGGAGGACTAGCATTCGCGCACT ACTGCCTCACCGGTAACGAGTTCCTTCGATTGTGTACCGGTGCCACACCAGGAACCAGGGACTACGACAAGCAGCACTGTAAGGACCTGCGGCTGTTGCC TCCGCATGTAGAGAACCCAATTTATGGTTGGTAG
AA sequence Show only first row Show all	>Lus10021273 pacid=23178238 polypeptide=Lus10021273 locus=Lus10021273.g ID=Lus10021273.BGIv1.0 annot-version=v1.0 MRPPFTIRSSSSSSSTDAFSFISKGWREVRDSADADLQLMRARAKSFKNLASSFDRELENFFSSAATPSESDFVKRIQPKLTEFRRVYSAPEISKKVLEK WGPTKAKLGIDLSSIRNALVSEVEGYDGDVGRSVEFDRVWRGRRRLKFNEFWGEWKVEGEGSQIEEWKPIRDLKRRFKELEKKSELGEIIEGFKNSEIVE KVKSSLEVPPLDVPELLASLVKQSGPFLDQLGVRRDICDKIVDSLCSKRKNQLLLNSLSTEESSLIGDDNGHDDLDLRIASVLQSTGHHYDGGFWTDQAK HIPVDGTRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSEKRNVTLLVPWLCQSDQELVYPSSITFGSPEEQEGYIRNWLEERIGFKADFRISFYPGKFSK ERRSIIPAGDTSQFIPSKEADIAILEEPEHLNWYHHGRRWTNKFNHVVGVVHTNYLEYIKREKHGALQAFLVKHINNWVARAYCDKVLRLSAATQDMPKS VVCNVHGVNPKFLRIGEKVAADTELGQHAFSKGAYFLGKMVWAKGYRELIDLLDKHKSDLDGFKLDVYGNGEDAHEVKSSAQSLNLNLNFLKGIDHADDS LHGYKVFINPSLSDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTPEDFVAKVKEAMEKEPQPLTPEQSYNLSWEAATQRFMQYSDLDKLLTD GKDGTLSKDSRMIKAGPVPNISEVLDGGLAFAHYCLTGNEFLRLCTGATPGTRDYDKQHCKDLRLLPPHVENPIYGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	0	1
AT1G28140			unknown protein		Lus10041480 [exp]	1.0	0.8868
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10013576 [exp]	5.4	0.8174
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	6.0	0.8770
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10005593 [exp]	7.4	0.8702
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	10.3	0.8790
AT3G19900			unknown protein		Lus10034203 [exp]	11.0	0.8714
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	23.0	0.8636
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	23.7	0.8629
AT5G55570			unknown protein		Lus10008950 [exp]	24.0	0.8531
AT4G27310	CO		B-box type zinc finger family ...		Lus10033751 [exp]	26.3	0.8038

Compare expression of checked genes

Lus10021273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.