Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06360 469 / 5e-170 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203400 [exp] 467 / 6e-169 AT5G06360 500 / 0.0 Ribosomal protein S8e family protein (.1) Potri.016G070400 [exp] 465 / 3e-168 AT5G06360 498 / 0.0 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Lus10021274 pacid=23178273 polypeptide=Lus10021274 locus=Lus10021274.g ID=Lus10021274.BGIv1.0 annot-version=v1.0 ATGGCTCAAGGGGATTATATCGAGCTCCATAGGAAGAGGAATGGCTACCGTTTCGACCACTTCGAGCGGAAGCGTAAGAGGCAGGCGCGTGAGGTTCACA AGCACTCCAAAACAGCCCAAACGGCTCTGGGTATCAAGGGCAAGCGGATTGCCAAGCAGAACTACAAAGATAAGGCTCAAATGAAAAAGACAATGAGAAT GCACGAGGAGTCATCAGCTAGGCGCAAGGCAGATGATGAGGTTGAAGAAGGAGCTGTTCCTGCATATCATCGTGCTCCCACGACGCGTGCTAAAGTTCTT AGCAACACCATCAAACAAAAGAGGAAAGAGAAGGCAGGGAAATGGGAGGTTCCTCTGCCTAAGGTTAGGCCCGTTGCTGAGGATGAAATGTTCAAAGTTA TAAGATCTGGCAAACGAAAGACCAAACAATGGAAAAGAATGGTGACAAAGGCAACGTTCGTGGGACCTGGTTTCACAAGAAAACCTCCAAAGTATGAGCG TTTCATTCGCCCATCAGGGTTGCGATTAACCAAGGCTCATGTGACCCACCCCGAACTCAAATGCACTTTCAATCTCGAGATCATCGGAGTGAAGAAAAAC CCTAATGGCGCGATGTACACATCTCTCGGCGTCATGACCAAGGGAACAATCATCGAGGTGAATGTCAGCGAATTAGGTCTTGTCACACCAGGTGGCAAAG TCGTTTGGGGAAAGTACGCACAAGTGACGAATAATCCGGAGAACGATGGCTGTCTAAATGCAGTTCTGTTGGTGTAA
AA sequence Show only first row Show all	>Lus10021274 pacid=23178273 polypeptide=Lus10021274 locus=Lus10021274.g ID=Lus10021274.BGIv1.0 annot-version=v1.0 MAQGDYIELHRKRNGYRFDHFERKRKRQAREVHKHSKTAQTALGIKGKRIAKQNYKDKAQMKKTMRMHEESSARRKADDEVEEGAVPAYHRAPTTRAKVL SNTIKQKRKEKAGKWEVPLPKVRPVAEDEMFKVIRSGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPSGLRLTKAHVTHPELKCTFNLEIIGVKKN PNGAMYTSLGVMTKGTIIEVNVSELGLVTPGGKVVWGKYAQVTNNPENDGCLNAVLLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06360			Ribosomal protein S8e family p...		Lus10021274 [exp]	0	1
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	3.7	0.8632
AT3G05560			Ribosomal L22e protein family ...		Lus10037498 [exp]	3.9	0.8596
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	3.9	0.8832
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	5.5	0.8520
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10031985 [exp]	6.9	0.8338
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	9.6	0.8552
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	9.9	0.8362
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	10.1	0.8498
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	10.2	0.8438
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	11.2	0.8463

Compare expression of checked genes

Lus10021274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.