Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 755 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 518 / 2e-169 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 475 / 5e-153 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 464 / 3e-149 Leucine-rich repeat protein kinase family protein (.1) AT2G17220 241 / 5e-71 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G70460 249 / 6e-71 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT4G02010 248 / 2e-70 Protein kinase superfamily protein (.1) AT5G15080 239 / 3e-69 Protein kinase superfamily protein (.1) AT1G23540 244 / 4e-69 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G01020 236 / 5e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016952 [exp] 1624 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 752 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 741 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 673 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 669 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 518 / 5e-169 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003807 [exp] 472 / 3e-151 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10001851 [exp] 461 / 3e-147 AT2G01820 693 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 456 / 9e-147 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203500 [exp] 1252 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 687 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 633 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 614 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.009G020400 [exp] 601 / 0 AT1G66150 511 / 5e-166 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 537 / 2e-176 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 535 / 7e-176 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 527 / 9e-173 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 522 / 4e-171 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.006G073900 [exp] 472 / 7e-152 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021275 pacid=23178191 polypeptide=Lus10021275 locus=Lus10021275.g ID=Lus10021275.BGIv1.0 annot-version=v1.0 ATGGGGAGTTACCGTCTGAAAATCTTGATACCCTTCTTCTTGTTTTTATTCTGCTTCGTTAAAGTGGTCTTCAGCGCTACAGACCCCGGGGATTTCGCTG TTCTGAAGGAATTCAGAGATGGGTTGGATAATCCAGAGCTCTTGGAATGGCCCACAGCTGGCGACGATCCTTGTGGCCAGTCATGGAAGCACGTCTTCTG CCACGGTTCAAGAATCTCCCAGATTCAAGTTCAGAACATGAGCTTGAAGGGAACTTTGCCTAAGGACTTCAACAAGCTTGGCATGCTTGAAAATCTGGGG CTTCAGAGGAACCAATTTAGTGGTTCTTTGCCATCTTTCAACGGCTTGTCTAAGTTGAGGTATGCTTTCTTGGATTACAACATGTTCGATTCAATTCCAA TGGATTTCTTTGATGGTCTGGATAGTTTGGAAGTCTTGGCATTGGATAGCAACAATTTTAATACCACTACTGGGTGGTCTTTCCCCAAGGGTTTGCAAAG TTCTGCACAGTTGACTAATCTTTCTTGTATGAGTTGCAATTTGGTGGGCCCGTTGCCTGATTTCCTGGGGAGCTTTGTGTCCTTGCAAAACTTGTTGCTT TCGCGCAACAGTCTGTCTGGTGAGCTACCTGCAAGCTTCAAGGACAACACTGCTCTGCAAAGGCTGTGGTTGAATAACCAGGAAGGCGGTGGATTCACCG GTTCGATCGATGTGGTAGCAATGATGGAATCTGCTACTGTTCTATGGCTTCATGGAAACCAGTTCACAGGTGCAATCCCTGAGAGCATTGGTAATTTGAC TGGGTTGAGGGATCTCAATCTCAATGGTAATAAACTTGTTGGGTTGGTTCCTGCAAGCTTAGCAGATTTGCCCTTGCAGAATTTGGATCTCAGCAATAAT CAGTTAATGGGGCCGATTCCAAAGTTCAAAGCTGCTAAAGTTTCATTGACTATGAATGCATTTTGCCAGTCTACCGCGGGAGTTCCATGCGCTGCTGAAG TTATGTCACTGATAGAGTTCCTTGCTGGGTTGAATTACCCTTCCAGGCTGGTGTCTTCATGGACCGGTAATGATCCATGTTCATCATGGCTAGGTGTTCG TTGTGATCCCAGTGGGAAAGTTGATTCTATTGTTTTGCCTAATTACAATCTCAGTGGAACTTTAAGTCCTTCAGTTGGTAAGCTTACTTCTCTGTCTATA ATCAGACTGGAAAGTAACAATATAACAGGTACAGTACCAGCAAATTGGACAAGCTTACCATCTCTGAACACCGTGGATCTTAGTAGCAACAATATTTCAC CTCCATTGCCTAACTTCTCTACCAAGGTCCATTTCGTTACAACAGGGAACCCTTTGTTGACAGGTGGTGGAAACAGTCCTCCAGGCAGCACCCCATCCTC TCCCAAGGGCAATGGAGGTCCGCCCTCTGGTAATAATGGAGCTTCTCCCGAGAGAAATGGTCCTAAAAGTTCCATTCTTGTTGCGGTTTTGGCTCCGGTT ATAAGTGTAGCTGTTGTGGCCATTCTAGCTATCCCACTATTCCTCTATTGTTACAAGAAGAGGAATGGAGGTACGTCCCAGGGTACGAGTTCCCTAGTCA TTCATCCAAGAGATCCATCTGACTTGGACAACTCAGTCAAGATTGCTGTTGCCAACAATGCTGCTGGACCCTCTTCCGCCAGAGCAGCTATTGGTGGACT TGGCGAGTCTCATGCTACCATTGAAGCAGGGAACCTCGTAATATCAGTTCAAGTTCTTCGAAATGTAACGAGAAATTTCGCCTCGGAAAACGAGCTAGGC CGTGGTGGGTTTGGAGTTGTTTATAAGGGAGAACTTGAAGATGGAACCACTATAGCTGTGAAGAGAATGGAGTCCGGTGTTGTTGGAAGTAAAGCCGTGG ATGAGTTCCAGTCAGAGATTGCAGTTCTTTCCAAGGTCAGACACCGACATTTAGTATCGCTAACTGGCTACTGCTTTGAAGGCAGTGAAAGAATCCTTGT GTATGAGTATATGCCTCAAGGAGCTCTCAGCAGACATCTTTTCCATTGGAAGAGGTTTCAGTTGGAGCCACTTTCTTGGAAAAGGAGGCTTAATATCGCC CTGGACGTTGCTAGAGGAATGGAGTATCTACATACTCTTGCTCATCAGAGCTTCATACACAGGGACCTCAAATCTTCAAACATCTTACTTGGTGATGATT TCAGAGCCAAAGTTTCAGACTTTGGACTCGTAAGACTTGCCCCCAATGGTCAGAATGCCATGGTAACCAAGCTTGCTGGAACATTTGGATACTTGGCACC TGAATATGCTGAGACGGGGAAAATCACAACCAAGGTTGATGTGTTTAGTTTTGGGGTGGTCTTGGTCGAGATGTTAACCGGATTAGTGGCTCTCGATCAA GACAGGCCAGAAGAAAAGCAGCATCTAGCTACATGGTTCCGGAAGGTATACTTGGATAAGGAAATGCTTCAGGGTGCCATCGACTCTGAACTCGAAGTGA ACAAAGATACGTTAGAGAGCATCTCAACGATCGCTGAACTTGCATGGCACTGCACTGCAAGGGATCCTAGTCAAAGACCAGAAATGGGGTATGCAGTGAA TGTGCTTGCTCCGCTAGTCGAGAAATGGAAGCCCATGGACGATGATCCTGAAGACTACTGTGGCATTGACTACAGTCTCCCACTAAACCAGATGGTTAAA GGTTGGCAAGAGGCGGAAGGAAAAGACTTGAGCTATGTGGACTTGGGAGACAGCAAAGGAAGTATTCCGGCTAGGCCAACCGGTTTCGCAGATTCTTTCA CTTCTGCAGATGGCCGATGA
AA sequence Show only first row Show all	>Lus10021275 pacid=23178191 polypeptide=Lus10021275 locus=Lus10021275.g ID=Lus10021275.BGIv1.0 annot-version=v1.0 MGSYRLKILIPFFLFLFCFVKVVFSATDPGDFAVLKEFRDGLDNPELLEWPTAGDDPCGQSWKHVFCHGSRISQIQVQNMSLKGTLPKDFNKLGMLENLG LQRNQFSGSLPSFNGLSKLRYAFLDYNMFDSIPMDFFDGLDSLEVLALDSNNFNTTTGWSFPKGLQSSAQLTNLSCMSCNLVGPLPDFLGSFVSLQNLLL SRNSLSGELPASFKDNTALQRLWLNNQEGGGFTGSIDVVAMMESATVLWLHGNQFTGAIPESIGNLTGLRDLNLNGNKLVGLVPASLADLPLQNLDLSNN QLMGPIPKFKAAKVSLTMNAFCQSTAGVPCAAEVMSLIEFLAGLNYPSRLVSSWTGNDPCSSWLGVRCDPSGKVDSIVLPNYNLSGTLSPSVGKLTSLSI IRLESNNITGTVPANWTSLPSLNTVDLSSNNISPPLPNFSTKVHFVTTGNPLLTGGGNSPPGSTPSSPKGNGGPPSGNNGASPERNGPKSSILVAVLAPV ISVAVVAILAIPLFLYCYKKRNGGTSQGTSSLVIHPRDPSDLDNSVKIAVANNAAGPSSARAAIGGLGESHATIEAGNLVISVQVLRNVTRNFASENELG RGGFGVVYKGELEDGTTIAVKRMESGVVGSKAVDEFQSEIAVLSKVRHRHLVSLTGYCFEGSERILVYEYMPQGALSRHLFHWKRFQLEPLSWKRRLNIA LDVARGMEYLHTLAHQSFIHRDLKSSNILLGDDFRAKVSDFGLVRLAPNGQNAMVTKLAGTFGYLAPEYAETGKITTKVDVFSFGVVLVEMLTGLVALDQ DRPEEKQHLATWFRKVYLDKEMLQGAIDSELEVNKDTLESISTIAELAWHCTARDPSQRPEMGYAVNVLAPLVEKWKPMDDDPEDYCGIDYSLPLNQMVK GWQEAEGKDLSYVDLGDSKGSIPARPTGFADSFTSADGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	0	1
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	1.4	0.8305
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	2.8	0.8417
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	5.3	0.8262
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	8.4	0.7643
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	10.2	0.7392
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	12.4	0.7945
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	13.0	0.8185
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	15.7	0.7196
AT5G55960			unknown protein		Lus10022565 [exp]	16.6	0.7726
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	18.3	0.8073

Compare expression of checked genes

Lus10021275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.