Plant FIBer expression Database

Lus10021276 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09180 405 / 1e-139 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016953
[exp]
651 / 0 AT3G09180 464 / 4e-163 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G070700
[exp]
470 / 9e-165 AT3G09180 504 / 1e-178 unknown protein
PFAM info
Representative CDS sequence
>Lus10021276 pacid=23178188 polypeptide=Lus10021276 locus=Lus10021276.g ID=Lus10021276.BGIv1.0 annot-version=v1.0
ATGGATGTGAAGCCGAATCTCCAGATGCAACACTTGCAACGGCAACCGGATCCTCAAGCCGCAGCAGCGACTCCAAGCACTAGCGCATCTCAGCCAGCGG
AGGCGCCGCCGAAGCAGGTGGCGTTGGCAATGGACAGGCTATCCCAGGCTGCTCGACTTATCGCCGATGTGAGGATCGGTGCTGACCAGCTTCTAGAGGC
ACTCTTCTTCGCCACTCAGTCTCACCAAAGCAACAAGACCTTGCAGTTCTTGATCAAGGAAGATGCTAACATGCGCCAGCACCTCCAGGAGCTGCGCACT
ATAGGAAGGCAGCTCGAGGAAACTGGGGTTCTGAACGATTCTATGAAATCCAGGGGTGATTCTTGGGGTTTGAATATACCCTTAGTTTGTCCAGATGGTG
CAGTGGTTGCTTATGCGTGGAAACGGCAGCTTGCTGGACAGGCCGGTGCTTCTGCTGTTGATAGAACCAGATTAGCTGTTAAGGCATTCAGCGATCAGAA
AAGGAGATTCTTTCCTCACCTAGAAGATGAAGAAGAAGATCAAAGTACAGAGCCAGCTGCTAAGAAACCCTGTCGGCCTCAGACGCTCTTGACAAGTCAG
CTAGATGAGCTGGAAGATTTCAAATCGCTTGCTGATGTTCTAGCTCGTCTAGAGAAGGAAGTCCCAAATGTTAAAGTTCTTACGTATCAACGACTGGATT
GGCTGAAAAGAGCTGCTTCTTTACCTATGTCGGGAAATAAGAATGACGTTGAATCTTCAAAAGAGCATACTTTTCACAGTTTAAATAAATTGAGGACAGG
AGCACAGAGTTCTGTTGCCTCTGAAAGGACTTCTGTGATTGAATTATCATTTCCCCATACCTTCAGAGCTGTAGTTTCCTTGCACCCTGCTGGTTCCATT
GATCCAGATGCTGTTGCATTCTTTTCCACAGACGAGGGCGGCAGCTATATGCATGCCAGGGGTTCTTCCATCCATCACGTTTATAGACACATCACGGAGC
ATGCCGGCATCGCTTTGCAGCATTTCCTTGAAGTCAAGAGTGAAGCAGCCCTGTACATTCTTTTGTACGTGTGGGAAGCTATTGAAACTGGATCAGAAGT
CGTCGATGATACTACCTCCAGTTTGTCGTTGGTTTCGACAATTCTTCCCTGCCATGGATTCTCTCTCCGAACCCACATCATCAAACAAGGACCAAAGTTT
TGTGATACCGGGAGCTTATCACGTCAGTTGCTACTCGGAGGAGTTATAGTTTTTGAGGTTTGCAGATTGTAG
AA sequence
>Lus10021276 pacid=23178188 polypeptide=Lus10021276 locus=Lus10021276.g ID=Lus10021276.BGIv1.0 annot-version=v1.0
MDVKPNLQMQHLQRQPDPQAAAATPSTSASQPAEAPPKQVALAMDRLSQAARLIADVRIGADQLLEALFFATQSHQSNKTLQFLIKEDANMRQHLQELRT
IGRQLEETGVLNDSMKSRGDSWGLNIPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLAVKAFSDQKRRFFPHLEDEEEDQSTEPAAKKPCRPQTLLTSQ
LDELEDFKSLADVLARLEKEVPNVKVLTYQRLDWLKRAASLPMSGNKNDVESSKEHTFHSLNKLRTGAQSSVASERTSVIELSFPHTFRAVVSLHPAGSI
DPDAVAFFSTDEGGSYMHARGSSIHHVYRHITEHAGIALQHFLEVKSEAALYILLYVWEAIETGSEVVDDTTSSLSLVSTILPCHGFSLRTHIIKQGPKF
CDTGSLSRQLLLGGVIVFEVCRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G09180 unknown protein Lus10021276
[exp]
0 1
AT3G01150 ATPTB1, PTB polypyrimidine tract-binding p... Lus10030688
[exp]
5.2 0.8064
AT3G49410 Transcription factor IIIC, sub... Lus10042710
[exp]
17.2 0.8002
AT3G49410 Transcription factor IIIC, sub... Lus10029672
[exp]
17.8 0.7721
AT1G07705 NOT2 / NOT3 / NOT5 family (.1.... Lus10040875
[exp]
21.4 0.7602
AT5G15540 EMB2773, ATSCC2 EMBRYO DEFECTIVE 2773, ARABIDO... Lus10032966
[exp]
21.5 0.7510
AT1G22800 S-adenosyl-L-methionine-depend... Lus10033838
[exp]
24.0 0.7588
AT1G18600 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROT... Lus10007614
[exp]
26.2 0.7184
AT1G52630 O-fucosyltransferase family pr... Lus10026792
[exp]
26.8 0.7417
AT3G46980 PHT4;3 phosphate transporter 4;3 (.1.... Lus10018203
[exp]
29.3 0.7376
AT2G18950 ATHPT, VTE2, TP... VITAMIN E 2, homogentisate phy... Lus10025472
[exp]
30.8 0.7466

Lus10021276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.