Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 251 / 2e-84 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 247 / 4e-83 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 178 / 2e-56 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT4G25434 44 / 5e-05 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 43 / 7e-05 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT5G47240 40 / 0.0007 ATNUDT8 nudix hydrolase homolog 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016955 [exp] 456 / 4e-165 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 366 / 7e-130 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 364 / 4e-129 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 243 / 3e-81 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 235 / 2e-78 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10029398 [exp] 234 / 3e-77 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10033839 [exp] 216 / 2e-70 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 178 / 2e-56 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 150 / 2e-41 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 251 / 3e-84 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 248 / 3e-83 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.010G242100 [exp] 231 / 1e-76 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G017900 [exp] 223 / 1e-73 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 190 / 2e-61 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 187 / 3e-60 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.016G006000 [exp] 47 / 4e-06 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 46 / 1e-05 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 45 / 2e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G080400 [exp] 44 / 6e-05 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10021278 pacid=23178261 polypeptide=Lus10021278 locus=Lus10021278.g ID=Lus10021278.BGIv1.0 annot-version=v1.0 ATGAGTTGGTGTGAGGTTCTGAGAAGCCCCCGTGTTTATCTCGTCGGAGAGAGACGAGACTACCCTTCGAAACCAGTCAAATTTTCCCGGCCGCCACCAG TTTCCTGCAAACGTACGTCTGTGGGGAAAGCTGGAGCCCCGCCAACGTTGACTGTGGAAAGTCCACCTGCTGGGTATCGGAAAAGCGTCGGGATTTGTTT GGTCAATTCATCCAATAAGGTCTTCACGGCGTCCAAGATATGGATTCCGGATAGTTGGCAAATGCCTCAGGGTGGAATCGATGAGGGGGAAGATGTCAGG AATGCAGCTATGAGAGAGTTGAGGGAGGAAACTGGTGTTACTTCAGCTCAGTTTGTTGGTGAGGCACCCTATTGGCTGACTTATGATTTCCCACGTCGAA TGCGAGAGAGGCTTAGTAGGAAATGGGGCACAAACTATAAGGGTCAGGCTCAAAAGTGGTTTCTTTTGAAGTTTGCGGGGGAGGACGCAGAGATTAACCT TTTTGGGGAAGGATTGGAAAAGGCAGAGTTGAAGCAGTGGACATGGCTGTCACCAGATGTGGTGGTTGACCATGCTGTGGATTTCAGGAAGCCTGTCTAT CAACAAGTTATCCGGTTGTTTAGTCCATATTTCCAAGCAAATGGTAATGTCGAACTGTGTGGTGAAACTAATGGCAGCCTTCATATTAAACCACGTCCTC TCAGATATACTCTACTGTGA
AA sequence Show only first row Show all	>Lus10021278 pacid=23178261 polypeptide=Lus10021278 locus=Lus10021278.g ID=Lus10021278.BGIv1.0 annot-version=v1.0 MSWCEVLRSPRVYLVGERRDYPSKPVKFSRPPPVSCKRTSVGKAGAPPTLTVESPPAGYRKSVGICLVNSSNKVFTASKIWIPDSWQMPQGGIDEGEDVR NAAMRELREETGVTSAQFVGEAPYWLTYDFPRRMRERLSRKWGTNYKGQAQKWFLLKFAGEDAEINLFGEGLEKAELKQWTWLSPDVVVDHAVDFRKPVY QQVIRLFSPYFQANGNVELCGETNGSLHIKPRPLRYTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	0	1
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	3.6	0.8909
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	6.2	0.9163
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	7.7	0.8980
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003892 [exp]	10.9	0.8531
AT3G07440			unknown protein		Lus10020404 [exp]	12.2	0.9132
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	13.1	0.8927
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	14.0	0.9034
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10028581 [exp]	14.1	0.8834
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	15.8	0.8924
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	16.3	0.8929

Compare expression of checked genes

Lus10021278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.