Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 249 / 6e-84 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 234 / 4e-78 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 176 / 6e-56 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT4G25434 45 / 2e-05 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 41 / 0.0003 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016956 [exp] 429 / 8e-155 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 367 / 4e-130 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 346 / 7e-122 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 253 / 3e-85 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 240 / 9e-80 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 236 / 4e-79 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10033839 [exp] 219 / 5e-72 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 182 / 2e-58 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 155 / 5e-43 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 256 / 2e-86 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 246 / 2e-82 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G017900 [exp] 228 / 1e-75 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 227 / 2e-75 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 195 / 2e-63 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 192 / 2e-62 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.016G006000 [exp] 50 / 4e-07 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 46 / 1e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 45 / 3e-05 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 44 / 4e-05 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10021279 pacid=23178278 polypeptide=Lus10021279 locus=Lus10021279.g ID=Lus10021279.BGIv1.0 annot-version=v1.0 ATGAGGTCGTGTGAGGTTCTGAGAAGCTCCCATGTTTATCTCGTCAGAGAGAGACGAGACTACCCTTCGGAGCCACTCAAATTTTCCCGGCTGCCACCAG CTTCCTGCAAAAGTAGGCTTTCTTCTTCCAGATCTTCCTCTGAGTCTCTGGGGAATGCAGCATCTCCTACTGCGTTGACTGTCGAAATTCCACCCGCTGG GTATCGGAAAAGCGTCGGGATTTGTTTGGTCAATTCGTCCAATAAGGTTTTCGCGGGTTCGAAGATATGGGTTCCAGATAGTTGGCAAATGCCTCAGGGT GGCATCGATGAGGGGGAAGATCTCAAGAATGCAGCTATCAGAGAGTTGAGGGAGGAAACTGCTATTACTTCAGCTCAGTTTCTTGCTGAGGCACCCTATT GGCTGACTTATGATTTCCCACGTCAAATGAGAGAAAGGCTTAGTAGGAAATGGGGCACAAACTATAAGGGTCAAGCTCAAAAGTGGTTTCTTTTCAAGTT TACGGGGGAGGACGCAGAGATTAACCTCTTCGGCGATGGATCGGAAAAGCAGGAGTTCAAGCACTGGACATGGCTGTCACCAGATGTGGTGGTTCACCAT GCTGTGGATTTCAGGAAGCCCGTCTATGAAGAAGTTATCCAGTTGTTTAGTCCATATATCCAAGCAAATGGTAATGCTGAAAGTGTGCAGTGA
AA sequence Show only first row Show all	>Lus10021279 pacid=23178278 polypeptide=Lus10021279 locus=Lus10021279.g ID=Lus10021279.BGIv1.0 annot-version=v1.0 MRSCEVLRSSHVYLVRERRDYPSEPLKFSRLPPASCKSRLSSSRSSSESLGNAASPTALTVEIPPAGYRKSVGICLVNSSNKVFAGSKIWVPDSWQMPQG GIDEGEDLKNAAIRELREETAITSAQFLAEAPYWLTYDFPRQMRERLSRKWGTNYKGQAQKWFLFKFTGEDAEINLFGDGSEKQEFKHWTWLSPDVVVHH AVDFRKPVYEEVIQLFSPYIQANGNAESVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	0	1
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	1.0	0.9290
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	6.3	0.8400
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	7.2	0.8295
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	7.5	0.8634
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	9.8	0.8612
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	10.6	0.8546
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	11.2	0.8491
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	12.7	0.8187
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	13.0	0.8309
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	14.1	0.8387

Compare expression of checked genes

Lus10021279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.