Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25210 87 / 1e-20 AtLpxC5 lipid X C5, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2) AT1G24793 87 / 1e-20 AtLpxC1 lipid X C1, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2) AT1G25145 85 / 8e-20 AtLpxC4 lipid X C4, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1) AT1G25054 85 / 8e-20 AtLpxC3 lipid X C3, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2) AT1G24880 86 / 9e-20 AtLpxC2 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001592 [exp] 119 / 5e-32 AT1G24880 339 / 8e-116 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3) Lus10003708 [exp] 117 / 2e-31 AT1G24880 365 / 1e-125 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3) Lus10043082 [exp] 39 / 0.0008 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106400 [exp] 71 / 9e-15 AT1G25145 391 / 6e-137 lipid X C4, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03331 [flax] [poplar] LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Representative CDS sequence Show only first row Show all	>Lus10021282 pacid=23178226 polypeptide=Lus10021282 locus=Lus10021282.g ID=Lus10021282.BGIv1.0 annot-version=v1.0 ATGTGGACGTGGTGCGCCGATAGCAGGGCCAACGAGATGTGGGAAAATCGTCTATACAAGGCAGAACGCGAGAATTACGACAAGATGATCCCCCATCCTT ATAGATGCAGCAGCAGAACTTCGTACGCAAATGGCGGTAACCAGAGGGATCATCTCCTGGAATCGGTACACACCTTAATTCCTTCCTCCTCCATTTACCT ACCCATTCAGCTTAAGAATCCGATTTCACTAATCGATCGGAATTCAGACTGGCAGGGTCCAGCAAACCCTAGCAAGAAGTCTGGAGCTGACCGGCATGGG TCTCCACTCCGGCAAGTCATCAAAGGTGCGAATCTCGCCGGAGCACGCGGGAAAGGGAAGGACCTTCGATTTCCATTCATGTGGAGCATCCCGGCGTCCA TTGACTTCGCGCTATGTCCTTCTCCACTCTGCACCACTCTCTCCAAGGACGGAGTCAGCATCCGGACTGTGGAACACTTGCTTTCAGCTCTTGAATCCAC CGGCGTCGACAACTGCAGGATCTGGATCGACAGTGCGGACTGCGATGATTCCGAAGTTGAGGTGAGCGATCTTCCGAAGTTGAGGTGA
AA sequence Show only first row Show all	>Lus10021282 pacid=23178226 polypeptide=Lus10021282 locus=Lus10021282.g ID=Lus10021282.BGIv1.0 annot-version=v1.0 MWTWCADSRANEMWENRLYKAERENYDKMIPHPYRCSSRTSYANGGNQRDHLLESVHTLIPSSSIYLPIQLKNPISLIDRNSDWQGPANPSKKSGADRHG SPLRQVIKGANLAGARGKGKDLRFPFMWSIPASIDFALCPSPLCTTLSKDGVSIRTVEHLLSALESTGVDNCRIWIDSADCDDSEVEVSDLPKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25210		AtLpxC5	lipid X C5, UDP-3-O-acyl N-ace...		Lus10021282 [exp]	0	1
AT2G06025			Acyl-CoA N-acyltransferases (N...		Lus10021559 [exp]	1.4	0.8682
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Lus10027086 [exp]	7.2	0.8537
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	9.6	0.8535
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	10.2	0.8366
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	11.0	0.8200
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	12.0	0.8448
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	13.0	0.8317
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	14.0	0.8475
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	14.7	0.8478
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	15.0	0.8356

Compare expression of checked genes

Lus10021282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.