Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52340 936 / 0 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 850 / 0 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52350 586 / 0 ATEXO70A3 exocyst subunit exo70 family protein A3 (.1) AT5G50380 330 / 4e-104 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 315 / 1e-98 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 303 / 2e-94 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G58430 297 / 3e-92 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G54090 293 / 1e-90 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G13150 259 / 2e-77 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G13990 254 / 3e-75 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043432 [exp] 837 / 0 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10034151 [exp] 820 / 0 AT5G03540 991 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10013163 [exp] 330 / 9e-107 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 333 / 4e-105 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 331 / 2e-104 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 319 / 1e-100 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10005436 [exp] 262 / 1e-78 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040872 [exp] 259 / 1e-77 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015757 [exp] 259 / 2e-77 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203900 [exp] 966 / 0 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.016G071000 [exp] 959 / 0 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.008G017800 [exp] 877 / 0 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.010G241800 [exp] 872 / 0 AT5G03540 988 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Potri.015G094800 [exp] 337 / 8e-107 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 330 / 2e-104 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 326 / 6e-103 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G166400 [exp] 325 / 1e-102 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.013G152900 [exp] 322 / 2e-101 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 320 / 1e-100 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10021283 pacid=23178276 polypeptide=Lus10021283 locus=Lus10021283.g ID=Lus10021283.BGIv1.0 annot-version=v1.0 ATGGGAGCGCCTGATCAGATGATGATGTCGCTGGCGTACAGGGCGGAATTCATGAAGGAAGCGCTGGAGAAGAGCCAGTCCGTTACCGATAGCATGGTCT CCATTCTCGGATCCTTCGACCACCGCCTCTCTGCCCTATCTGCCCTCGAAACCGCCATGCGTCCTACTCAGATAAGAACGCATTCGGTCAGGAGAGCTCA CGAGAACATCGACAAGACGCTCAAGTCTGCAGAGGTTATCCTGAGTCAATTCGATCAAACTCGGAAGGCAGAGGCGAAAATTCTGAGAGGACCACATGAG GATTTGGAGAGCTATCTAGAAGCAATTGAGCAGCTGAAAAGCACTGTCAAGTTCTTCAGCAGCAATAAGAACTTCAAGAGTAGTGATGGGGTGGTTCACC ATGCGAATCAACTGCTTGCCAAAGCCATATCAAAGCTGGAAGAAGAATTCAAGACCCTGCTAGCCAACTACAGCAAGCCTGTGGAATCTGATCGCCTTTT CGATGGGCTTCCAACCTCTCTGCGGCCATCATCCGCATCTGAGAAACATCATGGTGAACATGGTGGTGGTAAACATTCTTCTGACCAGCAAAAGGGCTTG GAATCTCCTGTTTACACACTTCCCACTCTTGTCCCGCCAAGGGTTGTGCCAGTGCTGCATGATTTAGCGCTGCAGATGGTTCAAGCTGACCGCCAACAGC AGCTTTTCAGAATCTTCAGGGATACTCGTGCTACAGTGTTGGAACAAAGCCTGAGGAAATTAGGCGTAGAGAGGCTTACTAAAGATGATGTCCAGAAGAT GCAATGGGAAGTTTTGGAAGCAAAGATTGGGAATTGGATACACTACATGAGAATTTCTGTTAAATTGCTTTTCACAGCAGAGAAGAAAATATGTGATCAA ATACTAGAGGGCATAGAATCGCTTAAGGATCCATGTTTTGCTGAAGTAACTGTCAACAGTGTGTCCATGCTGCTTAGTTTTGGAGATGCTGTTGCCAAAA GCAAGAGATCGCCTGAAAAACTATTTGTTTTATTGGACATGTACGAGATCATGAGAGAACTGCGCTCTGAGTTTGAGATAGTATTTGGAAGTAAAGCTTG CATGGAAATGAAAGAGTCTGCATTCAATTTGACAATTCGGCTAGCGCAGACTGCACAAGAGACCTTTATCGATTTTGAAGAAGCAGTGGAAAGAGATGCA ACCAAATCTGCTGTTCTTGATGGAACAGTGCATCCGTTGACTAGCTATGTCATAAACTATGTGAAGTTTCTGTTCGATTACCAATCTACGGTGAAGCAAC TTTTCCAGGAGCTTGAATCAGATGACCCCGAAGGCCAATTAGCCGCTGTAACAACCAGGATTATGCAGGCTCTCCAGACTAATCTAGACGGGAAATCCAA GCAATATAGAGACGCTGCACTCACACAGTTGTTTCTCATGAACAATATTCACTACATCGTGAGATCTGTGCGCAAGTCTCAGGCAAAGGATTTGTTGGGG GATGATTGGGTTCAGATTCATCGTCGGGTTGTGCAACAACACGCCAATCAGTACAAAAGGATATCATGGGCAAAGATACTGCAGTGTCTGACGGTTCAGG GTGCAGGAGAATCAAGTGGACTGTCTAGATCAATGGTGAAAGAGAGGTTCAAAACATTCAACTTCCAGTTCGAGGAGCTTTACACGAGGCAAGCTCAATG GACAGTCCCTGACAGCGAACTGCGAGAGTCTCTAAGGCTGGCCGTAGCTGAAGTTCTCTTGCCTGCATATCGGTCCTTCGTCAAGCGCTGCCAGCCTATG ATTGAGAGTGGGAGGAGCGCCAGTAAGTACTTAAGGTACTCACCTGAAGACCTAGAAAAGATGCTGAACGAGTTCTTTGAAGGCAAGATTTACAATGATC AGAAACGGTAA
AA sequence Show only first row Show all	>Lus10021283 pacid=23178276 polypeptide=Lus10021283 locus=Lus10021283.g ID=Lus10021283.BGIv1.0 annot-version=v1.0 MGAPDQMMMSLAYRAEFMKEALEKSQSVTDSMVSILGSFDHRLSALSALETAMRPTQIRTHSVRRAHENIDKTLKSAEVILSQFDQTRKAEAKILRGPHE DLESYLEAIEQLKSTVKFFSSNKNFKSSDGVVHHANQLLAKAISKLEEEFKTLLANYSKPVESDRLFDGLPTSLRPSSASEKHHGEHGGGKHSSDQQKGL ESPVYTLPTLVPPRVVPVLHDLALQMVQADRQQQLFRIFRDTRATVLEQSLRKLGVERLTKDDVQKMQWEVLEAKIGNWIHYMRISVKLLFTAEKKICDQ ILEGIESLKDPCFAEVTVNSVSMLLSFGDAVAKSKRSPEKLFVLLDMYEIMRELRSEFEIVFGSKACMEMKESAFNLTIRLAQTAQETFIDFEEAVERDA TKSAVLDGTVHPLTSYVINYVKFLFDYQSTVKQLFQELESDDPEGQLAAVTTRIMQALQTNLDGKSKQYRDAALTQLFLMNNIHYIVRSVRKSQAKDLLG DDWVQIHRRVVQQHANQYKRISWAKILQCLTVQGAGESSGLSRSMVKERFKTFNFQFEELYTRQAQWTVPDSELRESLRLAVAEVLLPAYRSFVKRCQPM IESGRSASKYLRYSPEDLEKMLNEFFEGKIYNDQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Lus10021283 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	1.7	0.8776
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	5.7	0.8390
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	9.2	0.8356
AT5G61390			Polynucleotidyl transferase, r...		Lus10000567 [exp]	9.3	0.8003
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10015192 [exp]	9.7	0.8572
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	11.0	0.8454
AT1G71110			unknown protein		Lus10007962 [exp]	11.2	0.8214
AT3G55420			unknown protein		Lus10040295 [exp]	12.0	0.8224
AT5G43150			unknown protein		Lus10010543 [exp]	13.3	0.8342
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	18.2	0.8259

Compare expression of checked genes

Lus10021283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.