Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52460 127 / 1e-34 hydroxyproline-rich glycoprotein family protein (.1) AT2G27260 91 / 2e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 62 / 3e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 59 / 5e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 57 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22870 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 51 / 2e-07 NHL3 NDR1/HIN1-like 3 (.1) AT2G35460 50 / 3e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 50 / 6e-07 NHL2 NDR1/HIN1-like 2 (.1) AT5G06330 49 / 9e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004193 [exp] 107 / 1e-27 AT3G52460 95 / 3e-23 hydroxyproline-rich glycoprotein family protein (.1) Lus10005216 [exp] 88 / 4e-20 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029396 [exp] 78 / 6e-17 AT3G52460 46 / 4e-06 hydroxyproline-rich glycoprotein family protein (.1) Lus10043411 [exp] 76 / 1e-15 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 75 / 2e-15 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 57 / 2e-09 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 55 / 1e-08 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 54 / 3e-08 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 53 / 4e-08 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204000 [exp] 163 / 2e-48 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071200 [exp] 122 / 6e-33 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G218300 [exp] 87 / 1e-19 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019800 [exp] 82 / 3e-18 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 72 / 1e-14 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 62 / 2e-11 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 61 / 9e-11 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 57 / 3e-09 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 54 / 2e-08 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 51 / 2e-07 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021284 pacid=23178247 polypeptide=Lus10021284 locus=Lus10021284.g ID=Lus10021284.BGIv1.0 annot-version=v1.0 ATGCCTCACTCGTCGTCGTCCGATGAAGATTCTTCACCGAAGAAACCCAAAAACTCCTCGTCCTCGTCCTCCGCAGCCGTCGGCACCAACAGCCAGCAAT ATCCGCCGGGGCCGTACCCACCCGGGGGCAACAACCCTCAAACCATGGGCTACCCTCCGTACATGGGTTATCCGCCGCCGGGTCAACCCGGCCCGTACCA ACACCCGAACCAATACCCACCCCCGCCGCAGCAGGGGTACAATTACAACTATCCACATTACAATTACCCAACCCAGGCCCCGCCGGCGGCGTACTACAAC AACAATTACCCGACGCAGCAGGAGCTGGAGGCGGCAGCGGGGTTCGCCCGCGGGTTCCTAATAGGGATGATGCTCCTCTTCCTCTTCATATTTCTCTCCA CCATCATCATGTGGGTCGTCCTCCGCCCCGAGGTACCCGAATTCAAGGTCGAATCTCTCTCCGTCACGAACTTCAACGCCAAGCCCAACACGTTCGCCGG CGATTGGGGCGCGAACGTCACCGCGCGTAACCCCAACACCAAGATCCGCCTCTTCTTCAACCAGATCGAGACGTTCATGTTCTTCGGAGACGAGGAGCTG GCGTCGTCGTACGCCAATCCGTTTACTCTGGATATCGGAGCGGAGGCGCCGTTCATGGCGAAGATGGCGGCGAACAGGTCGGCAGACGGCGGAGAGGAGG AAGGGGAGGCGATGCAGAAGATGACGGAAGAGTTCGGAAAAGGGGCGGTGGAGTTCAGCCTGAGGATGGCGGCGTGGACCACATTCAGGTCGGATTCGTG GTGGACGAGGCGGTCGATGGTGAGGATATTCTGTGAGGAGTTGAAAGTTGGGTTCGTCGGGAAGTCCGGGAACGGGAGTTTGGTCCCCGGCGGGAATAGG GATTGTTTGGTTTTTGTCTGA
AA sequence Show only first row Show all	>Lus10021284 pacid=23178247 polypeptide=Lus10021284 locus=Lus10021284.g ID=Lus10021284.BGIv1.0 annot-version=v1.0 MPHSSSSDEDSSPKKPKNSSSSSSAAVGTNSQQYPPGPYPPGGNNPQTMGYPPYMGYPPPGQPGPYQHPNQYPPPPQQGYNYNYPHYNYPTQAPPAAYYN NNYPTQQELEAAAGFARGFLIGMMLLFLFIFLSTIIMWVVLRPEVPEFKVESLSVTNFNAKPNTFAGDWGANVTARNPNTKIRLFFNQIETFMFFGDEEL ASSYANPFTLDIGAEAPFMAKMAANRSADGGEEEGEAMQKMTEEFGKGAVEFSLRMAAWTTFRSDSWWTRRSMVRIFCEELKVGFVGKSGNGSLVPGGNR DCLVFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52460			hydroxyproline-rich glycoprote...		Lus10021284 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	133.9	0.6134
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	168.3	0.5864

Compare expression of checked genes

Lus10021284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.