Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52470 265 / 9e-91 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 260 / 7e-89 NHL1 NDR1/HIN1-like 1 (.1) AT2G35960 246 / 1e-83 NHL12 NDR1/HIN1-like 12 (.1) AT5G06330 233 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 214 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35970 213 / 2e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 209 / 6e-69 NHL22 NDR1/HIN1-like 22 (.1) AT5G22200 186 / 1e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 136 / 5e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 107 / 1e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016960 [exp] 370 / 3e-132 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 257 / 9e-88 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 254 / 1e-86 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 171 / 2e-53 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 170 / 2e-53 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 157 / 3e-48 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 119 / 2e-33 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 114 / 2e-31 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10010103 [exp] 93 / 4e-23 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071500 [exp] 287 / 2e-99 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 278 / 7e-96 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 216 / 2e-71 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 168 / 7e-53 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 149 / 5e-45 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 142 / 1e-42 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 108 / 4e-29 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 105 / 2e-28 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 74 / 5e-16 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 69 / 2e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10021286 pacid=23178282 polypeptide=Lus10021286 locus=Lus10021286.g ID=Lus10021286.BGIv1.0 annot-version=v1.0 ATGTCGAAGGACTGCGGCAGCCACGGCGAGAAGCGACGGAAGTTCTTCCGCAGGATCTTCGCCGGAATTCTGGTCTTCCTCTTCATCGTCCTCATCACAA TCCTCATAATCTGGGCCGTCCTCCGCCCGAGCAAGCCTTCCTTCATCCTCCAGGACGCCACCGTCTACGCCTTCAACGCCTCAACTCCCAACGTCCTCAC CTCCAATTTCCAGGTCACCTTCTCCACTCGCAACTCCAACGACAAGATCGGGATCTACTACGACAAGCTGGACGTCTACGCGCAGTACCGGAACCAGCAG ATCACGCTCCGGACTCAAATCCAGCCCTTCTACCAGGGACACAAGGAGATCAACGTCTGGTCTCCTTTCGTCTACGGCACCGCCGTCCCTGTCTCGCCTT ACAACGCCGTCGCGCTAGGCCAGGACCAGTCCTCAGGCAGCGTCCTCCTCCTGATCAAAATGGATGGCCGCGTTCGATTCAAGGTCGGCAGCTTCATCTC CGGCCGGTACCACCTGTACGTCCGCTGCCAGGCATACATTCAATTCGGGAACAGAAACGCAGGGATCGCTGTCGGTAATAACGCCGTTAAGTACCAGTTG GCTGAAGGCTGCAGCGTCAGCGTCTAG
AA sequence Show only first row Show all	>Lus10021286 pacid=23178282 polypeptide=Lus10021286 locus=Lus10021286.g ID=Lus10021286.BGIv1.0 annot-version=v1.0 MSKDCGSHGEKRRKFFRRIFAGILVFLFIVLITILIIWAVLRPSKPSFILQDATVYAFNASTPNVLTSNFQVTFSTRNSNDKIGIYYDKLDVYAQYRNQQ ITLRTQIQPFYQGHKEINVWSPFVYGTAVPVSPYNAVALGQDQSSGSVLLLIKMDGRVRFKVGSFISGRYHLYVRCQAYIQFGNRNAGIAVGNNAVKYQL AEGCSVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	0	1
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	1.0	0.9045
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	1.7	0.8916
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	4.0	0.8740
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	5.3	0.8858
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	5.3	0.8584
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	7.6	0.8949
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	8.5	0.8316
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	8.5	0.8687
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	9.3	0.8394
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	11.0	0.8823

Compare expression of checked genes

Lus10021286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.