Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35980 215 / 2e-70 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 195 / 9e-63 NHL3 NDR1/HIN1-like 3 (.1) AT3G11650 166 / 3e-51 NHL2 NDR1/HIN1-like 2 (.1) AT2G35460 165 / 8e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G32270 108 / 9e-28 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT3G11660 86 / 2e-20 NHL1 NDR1/HIN1-like 1 (.1) AT5G22870 82 / 5e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 79 / 6e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 79 / 9e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 79 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016962 [exp] 398 / 1e-142 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 385 / 7e-138 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 90 / 5e-22 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 90 / 7e-22 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 89 / 2e-21 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 86 / 3e-20 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 85 / 6e-20 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 77 / 5e-17 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 75 / 3e-16 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204300 [exp] 225 / 1e-74 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 221 / 3e-73 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 96 / 2e-24 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 96 / 2e-24 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 85 / 7e-20 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 79 / 4e-18 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 76 / 6e-17 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 75 / 2e-16 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 73 / 9e-16 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.014G106100 [exp] 72 / 4e-15 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10021287 pacid=23178184 polypeptide=Lus10021287 locus=Lus10021287.g ID=Lus10021287.BGIv1.0 annot-version=v1.0 ATGGCTGAAACCAAGCAAGCAAATCCACTCAACGGTGCCTACTACGGCCCATCAATCCCACCGCAACAGAGTTACCACAGCCATGGCCGCCGATCCGGCT GCGGCTGCTGTGGATGTCTCTTCAGCTGCCTCTTCAAGATCATCGTCACCATCCTCGTTGTAATCGGCATAGCCATCCTCGTGTTCTGGCTAGTGGTCCG ACCCAACAAGATCAAAGTCAACCTAACCGACGCCACCTTAACCCAGTTCAACCATTCCTCATCCGACAACCTCCTCCGCTACAACCTCGTGCTGAACGTC ACCGTTCGCAACCCCAACAAGCGAATCAGAATCTACTACGACTCCATCGAGGCGCGTGGGTATTACTCGGGTCAGCGGTTCGGGTACACTGGTCTACAGC CATTCTACCAGGGTCACAAGAACACCAGCGTCCTCCGCGCTAATCTGCAGGGGCAGAACGTGGTCGTATTGAGCGGGGGCGATCTGGCCGATTTCAACAG GGAGACTTCGGAGGGGGTTTACAGAGTGGACGTGACGTTTTATATGAGGATTAGGCTTAAGGTTGGCAAGATTAAAACCAGGAGGATGAAGCCTAAGGTT GAATGTGAGATGTATGTTCGTCCTAACGGCGGCGGCTTGGTTGCTGGCCGTCGTAACAAGTGCGAGATTGACTTCTGA
AA sequence Show only first row Show all	>Lus10021287 pacid=23178184 polypeptide=Lus10021287 locus=Lus10021287.g ID=Lus10021287.BGIv1.0 annot-version=v1.0 MAETKQANPLNGAYYGPSIPPQQSYHSHGRRSGCGCCGCLFSCLFKIIVTILVVIGIAILVFWLVVRPNKIKVNLTDATLTQFNHSSSDNLLRYNLVLNV TVRNPNKRIRIYYDSIEARGYYSGQRFGYTGLQPFYQGHKNTSVLRANLQGQNVVVLSGGDLADFNRETSEGVYRVDVTFYMRIRLKVGKIKTRRMKPKV ECEMYVRPNGGGLVAGRRNKCEIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021287 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	3.5	0.9770
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	7.0	0.9603
AT1G45063			copper ion binding;electron ca...		Lus10006657 [exp]	8.9	0.9618
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	8.9	0.9626
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	16.3	0.9651
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	21.8	0.9630
AT1G17860			Kunitz family trypsin and prot...		Lus10007888 [exp]	22.5	0.9402
					Lus10015339 [exp]	26.2	0.9604
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	26.3	0.9579
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	30.2	0.9587

Compare expression of checked genes

Lus10021287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.