Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35980 195 / 1e-62 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 181 / 5e-57 NHL3 NDR1/HIN1-like 3 (.1) AT2G35460 147 / 7e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 147 / 8e-44 NHL2 NDR1/HIN1-like 2 (.1) AT1G32270 103 / 7e-26 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT3G11660 77 / 5e-17 NHL1 NDR1/HIN1-like 1 (.1) AT2G35960 77 / 5e-17 NHL12 NDR1/HIN1-like 12 (.1) AT3G52470 73 / 1e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 72 / 5e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 71 / 6e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016962 [exp] 362 / 2e-128 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 358 / 4e-127 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 76 / 2e-16 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 73 / 1e-15 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 73 / 1e-15 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 70 / 1e-14 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 70 / 1e-14 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 67 / 4e-13 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 65 / 1e-12 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204300 [exp] 210 / 7e-69 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 207 / 2e-67 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 81 / 3e-18 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 76 / 1e-16 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.009G003800 [exp] 74 / 3e-16 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 73 / 1e-15 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.011G027400 [exp] 72 / 2e-15 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 71 / 6e-15 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 70 / 1e-14 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 71 / 2e-14 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10021288 pacid=23178240 polypeptide=Lus10021288 locus=Lus10021288.g ID=Lus10021288.BGIv1.0 annot-version=v1.0 ATGGCTGAAACCAAGCAAACAACTCCACTCAACGGTGCTTACTACGGGCCATCAATCCCACCCCAACAGAGCTACCACAGTCACCGCCGATCTGGCTGTG GCTGCTGCGGATGTCTCTTCAGCTGCCTCCTTAAGATCATCCTCACCATCGTTGTTGTAATCGGCATAGCTATCCTAGTATTCTGGCTAGTGGTCCGACC CAACAAGATGAAAGTCAACCTAACCGACGCCACCTTAACCCAGTTCAACCATTCCTCATCCGACAATCTCCTCCGCTACAACCTCGCGCTAAACGTCACT GTTCGCAACCCCAACAAGCGAATCGGAATCTACTACGACTCAATCGAGGCGCGTGGGTTTTACTCGGGTCAGCGGTTCGGGTACACGACGCTCGGTCCTT TCTACCAGGGTCACAAGAACACAAGCGTCCTCAGCACTAATCTGCAGGGGCAAAACGTCGTCGTATTGCGCGGGGGTGATCTGGCCGATTTCAACAGGGA GACTACAGAAGCGGTTTACAGAGTGGATGTGACATTTTATATGAGGATTAGACTCAAGTTTGGAAAGATTAAAACCAGGAGGATGAAGCCTAAGGTTGAG TGTGAGATGTATCTTAGTCCTAACGGCGGCGGCTTGGTTGCTGGCCGTCGTAACAAGTGCGAGATTGACTTCTGA
AA sequence Show only first row Show all	>Lus10021288 pacid=23178240 polypeptide=Lus10021288 locus=Lus10021288.g ID=Lus10021288.BGIv1.0 annot-version=v1.0 MAETKQTTPLNGAYYGPSIPPQQSYHSHRRSGCGCCGCLFSCLLKIILTIVVVIGIAILVFWLVVRPNKMKVNLTDATLTQFNHSSSDNLLRYNLALNVT VRNPNKRIGIYYDSIEARGFYSGQRFGYTTLGPFYQGHKNTSVLSTNLQGQNVVVLRGGDLADFNRETTEAVYRVDVTFYMRIRLKFGKIKTRRMKPKVE CEMYLSPNGGGLVAGRRNKCEIDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	0	1
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	2.0	0.9860
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021287 [exp]	3.5	0.9770
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	3.5	0.9816
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	5.3	0.9714
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	5.3	0.9811
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	5.8	0.9839
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	7.3	0.9787
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	7.5	0.9794
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	10.7	0.9670
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	11.0	0.9807

Compare expression of checked genes

Lus10021288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.