Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26380 472 / 1e-162 FAD-binding Berberine family protein (.1) AT1G26420 466 / 3e-160 FAD-binding Berberine family protein (.1) AT4G20800 461 / 3e-158 FAD-binding Berberine family protein (.1) AT1G26390 456 / 3e-156 FAD-binding Berberine family protein (.1) AT1G26410 447 / 8e-153 FAD-binding Berberine family protein (.1) AT1G26400 443 / 3e-151 FAD-binding Berberine family protein (.1) AT2G34810 441 / 3e-150 FAD-binding Berberine family protein (.1) AT1G30720 436 / 1e-148 FAD-binding Berberine family protein (.1) AT1G34575 435 / 3e-148 FAD-binding Berberine family protein (.1) AT1G30730 433 / 2e-147 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023374 [exp] 737 / 0 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 725 / 0 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 455 / 7e-156 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 446 / 2e-152 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 435 / 7e-148 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 431 / 1e-146 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023375 [exp] 411 / 1e-138 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 401 / 3e-134 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 396 / 7e-133 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459100 [exp] 558 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 550 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 545 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 525 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 523 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 518 / 1e-180 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 481 / 3e-166 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 467 / 6e-161 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 462 / 1e-158 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462600 [exp] 457 / 9e-157 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10021289 pacid=23178234 polypeptide=Lus10021289 locus=Lus10021289.g ID=Lus10021289.BGIv1.0 annot-version=v1.0 ATGATTATTATTTTTCTTCTTTTCCTCTCATTTTCTTCTCATCTTTTGATCACAGCTTCTTTTCCTTCATCCCAAGTCCAATCCTTCCAGCAATGTCTTC ATGACCACAATTCATCCGACTCCGTTTTATACCTCCCAACCAATTCCACCTTCTCCACCGTGCTAAACGCATACATCCATAACCTTAGGTTCGCGCGCCC CTCAACCCCTAAACCTCTGGCTATTGTGGCCCCCACCAATGAGTCACACGCCATAGCCACCGTCCTCTGCACAAAACTGGTCGGACTTCAACTCAGGATT CGTAGCGGCGGCCATGATTACGAAGGCCTTTCTTATTGGTCGCCTTCCCCGTTCATCCTCCTCGACATGAACAATCTCCGGTCAATTGACATCGATCTTC CCTCTGAAACCGCTTGGGTTGAATCTGGAGCTACTTTAGGTGAGCTTTACTACTTGATAGCCAAGAAGAGCAAAACCCACGCCTTCCCTGCTGGGCTTTT CTCCACCCTCGGCGTCGGCGGGCACTTTGTTGGCGGCGGGTACGGTAAGCTGTTGAGGAAATACGGTCTCTCCATCGATAACGTCCTTGATGCGCGTGTG GTGGACGCCAACGGGAATATCCTGGACAGATCGACAATGGGTGATCTGTTCTGGGCGATACGAGGCGGCGGCGGAGCCAGTTTCGGAGTTATCCTTTCGT GGAAGATTAAGCTCGTTAAGGTTCCTGAAATCGTCACCATTTTCAAATTGAAGCGAAAATTGGAGGAAGGAGCGACTGACGTCTTTTACAGGTGGCAACA GGTGTCGACCAATCTGAGTCGGGACCTTTTCATAAGAGCTATGCCGGAGGTTGTGGATGCTGAGAAGAAGGGAGGGAAGGAGGTTCAAATATCGTTTGTC GGAGAGTATTTGGGACGACTGACGGAACTCGTTCCCTTACTAGATGAAAGCTTTCCTGAATTGGGCTTCAGGGCAGAGGACGGGGCAGAAGTGAGTTGGG CCGAGTCCATCATGTCGTGGTCCAGGCTTCCGAAAGGCCCACTTGAGTTGTTGCTGGACAGAAAATTCAAAGCCGGGTATTCCAAGAGTAAATCTGATTA CGTGAAAGAGGTGATTCCTAAGGAAGCGCTGCCGGGGATATGGGACGCAATTCTGAAAACAGGCAGTGCTTTTACGTTGTGGAATCCTTACGGCGGGAGG ATGGCAGAGATTCCAACAGACGAGACGGCGTACGCTCACAGAGCTGGGTATTTGTTCAAAGTGGAATATCGTTTGGGTTGGGTTGAAGATGGAGAGGAAG CAGAGGCGGAACACATTGCTGCGCTGACAGCGTTACATGACGCAGTGAGCCCGTACGTGACCAAGGAGCCGAGAGAGGCGTTTTTCAATTATAGAGATCT TGCCATCGGGGAGAACTCTGTTGACAAACCCGATTGGGAGAAGGCCAAAGTTTACGGGGAAAAGTATTTCAAGGGTCATTTTGAGAGACTATCAAAGATT AAGCGCCAATTTGATCCCGAAAATTTCTTCAGGGATCAACAAAGCATCCCTCCCTTCCCCCATTGA
AA sequence Show only first row Show all	>Lus10021289 pacid=23178234 polypeptide=Lus10021289 locus=Lus10021289.g ID=Lus10021289.BGIv1.0 annot-version=v1.0 MIIIFLLFLSFSSHLLITASFPSSQVQSFQQCLHDHNSSDSVLYLPTNSTFSTVLNAYIHNLRFARPSTPKPLAIVAPTNESHAIATVLCTKLVGLQLRI RSGGHDYEGLSYWSPSPFILLDMNNLRSIDIDLPSETAWVESGATLGELYYLIAKKSKTHAFPAGLFSTLGVGGHFVGGGYGKLLRKYGLSIDNVLDARV VDANGNILDRSTMGDLFWAIRGGGGASFGVILSWKIKLVKVPEIVTIFKLKRKLEEGATDVFYRWQQVSTNLSRDLFIRAMPEVVDAEKKGGKEVQISFV GEYLGRLTELVPLLDESFPELGFRAEDGAEVSWAESIMSWSRLPKGPLELLLDRKFKAGYSKSKSDYVKEVIPKEALPGIWDAILKTGSAFTLWNPYGGR MAEIPTDETAYAHRAGYLFKVEYRLGWVEDGEEAEAEHIAALTALHDAVSPYVTKEPREAFFNYRDLAIGENSVDKPDWEKAKVYGEKYFKGHFERLSKI KRQFDPENFFRDQQSIPPFPH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	0	1
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031061 [exp]	1.0	0.9209
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034232 [exp]	2.0	0.8350
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	5.8	0.7981
					Lus10005828 [exp]	7.3	0.7674
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	7.7	0.8700
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	7.9	0.8447
					Lus10040955 [exp]	9.2	0.7663
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	9.8	0.8010
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10027013 [exp]	11.0	0.6138
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	16.1	0.8034

Compare expression of checked genes

Lus10021289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.