Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52490 618 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 232 / 2e-63 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 210 / 6e-56 Clp amino terminal domain-containing protein (.1) AT4G29920 206 / 8e-55 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 202 / 1e-53 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 128 / 5e-31 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 130 / 1e-30 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 121 / 8e-28 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 71 / 4e-12 HOT1, ATHSP101 heat shock protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016966 [exp] 1388 / 0 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 340 / 1e-103 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 343 / 3e-102 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 232 / 2e-63 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 228 / 5e-62 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 187 / 7e-49 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 125 / 4e-29 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004526 [exp] 117 / 2e-28 AT3G52490 75 / 1e-14 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009953 [exp] 107 / 1e-26 AT3G52490 68 / 1e-13 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204500 [exp] 731 / 0 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 702 / 0 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 405 / 2e-127 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 404 / 6e-127 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 308 / 4e-90 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 294 / 7e-85 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 233 / 1e-63 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 232 / 4e-63 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 119 / 5e-27 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 117 / 1e-26 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10021291 pacid=23178217 polypeptide=Lus10021291 locus=Lus10021291.g ID=Lus10021291.BGIv1.0 annot-version=v1.0 ATGAGAACAGGAGGTTGCTCTGTGCAACAAGCTCTAACCCCAGAGGCAGCCAACTTAGTGAAGCAGGCTGTGACTCTGGCAAGGAGAAGAGGTCACGCGC AGGTGACTCCTCTCCACGTGGCCAACACCATGTTGGCTGCATCGACGGGGATTCTTAGAACTGCTTGCCTCCAGTCTCACAACCATCCTCTCCAGTGTAG AGCTTTGGAGCTTTGCTTCAACGTTGCCCTTAACCGCCTACCTGCCTCAACTTCCTCCGGCCCGATGTTAGGTGGTCCTCACCACCTTCACCAACCGCAA TACCCTTCCATCTCCAACGCCTTGGTGGCTGCTTTCAAGCGTGCTCAGGCTCACCAAAGGCGCGGCTCCATCGAGAACCAGCAGCAACCCTTGCTGGCTG TGAAGATTGAGCTGGAACAGCTCATCATATCGATACTAGATGATCCAAGTGTTAGTAGGGTGATGAGGGAAGCTGGGTTCTCGAGTACGCAAGTTAAGAG CAATGTTGAGCAGGCTGTTTCCTTGGAGATTTGCTCTCCACAAACTACTGCTAATTCCAACACCAGTAGCAAGTCCAAGGAAAACAATAGTAATAAACCA CAGAGTAGTACGGGTGCAGTCACAGCCGCTCTTGATGATCCAATCAGGAAAGAAGACGTGGTGAGTGTGATTGAGAATTTAGTGAGTAATCGGTCGAGAA GGAGAGGGGTGGTGATAGTGGGAGAGTGTCTCAGTATTGCTGAAGGCGTGCTGAAAGGAGTGATGGAAAAAGTCGAAAATGGCGAAATACCTGAAGTTCT GAGGGGAGCTAAGTTCGTGTCATTGTCTTTTGGACAGCTTTGTACGGTGGAAGAGGTGGAACAAAAGGTTGAAGAGGTTAAGGGGATAGTAAGGAGTTAT ATGAACAAAGGGGTGATTTTGAATTTAGGAGATATCAAATGGGCTACTGACTGTAGAGATGGCGAGATGAGGAGTATGGAGCACTTGATCATGGAGATTG GGAAGTTGGCTTGGGGAATTGGATCAGATCAACATCAGAGCAATGATAGATTTTGGATGGTGGGGGTTTCAACTTTCCAAACTTACACAAAGTGTAAATC AACAACACCGGGAAGCCATCCATCATCATCCTCACCATCGTCATCATCATTAGAATCAGTTTGGGGGCTTCATCCAGTTACAATCCCTGCGGGAATCTTG CGGTTGAGTCTCATTACAACTGACAGTGACTTGGGAAGAAGCCAATGCAGTAATAATAACAGTAAAGCTGCTGGAAATGGGTCGAGTAATAACAGCAGCT GGATCATAATTCAAGAAGGGGATGAGCCAAAGCAGGAACCCAATTGCTGTAGCAGTGGTGAATATTATTCAAATAATGAAAGAGGTGGAAGAACTGGAAG CAGCAGCTGCCGATTGGGTAATAATAATAACAGCACTTGCTATAACAGTTGTTCCGACTCCCCTACTACTACTCCTACTTCCTCTCAGCTCCCTGCATGG CTTCAACCTTACAAGACCTACACCAACCCTCCTCCTCCTCCTCCTCATCATCAGGATGCAGTGTCAATCAAAGATCTTTGCAGAAGGTGGAACTCCAGTT CATCATTGAACCACCACTACGACTCAAGTTACTCCTCCCCCGATGATCACTACAGTGGTAGAATGAAGACTCTCACATTTGCCTCACTAGTCTCTCCCTC ACCCTCCTCTATTTCTTCCTACCACCTTGATCATCAACAACAATGGCCATCTATTAACAATCAACCACCATGGATGAGATCATCAGCATCACCACACCCA CATTGGACCACCAAAACCCTAACTCCAATCGATAACCCTAACAACCACCAACGTCCACCGCCGTTATTCATCACCCCGACTGCATCAACCCCGAACTCCC ACTCCACCACCACCCCAAACTCGACCTCCTCAAGCGAAGCCGCAACAGACCTTTCCGAGTCCGTCCTACAACCCCGGTTCAAGGAGCTGAACTCGGAGAA CCTCAAAACCTTATGTACCGTGATGGAGAAGCAAGTTCCCTGGCAGCGGCACGTCATCCCCGACATAGCCAGCACCATCCTACAATGCCGCTCCGGCATG GTCCGTAGACGTAGACTACCTGACGTAGATTCCGACGTCGTCGTGGCAGCCGCAGCCAAGGAAGACACGTGGCTGTTCTTCCAAGGAGCTGACGCGGACG CCAAAGAGAAGATCGCTAGGGAGCTGGCGAGAGCCGTGTTTGGGTCCCACAACAGGCTGGTGTCCATAGCTCTGAGCAGCTTCTCCTCGACGGAAGATTC TAGAAGCTGGTATAAGAAGAGGGGGAGGTCGGAGGAGAAGAGCTACATGGAGAGGTTCGCGGAGGAAGTGAGGAGGGACCCACACAGGGTGTTCTTGGTT GAGGACGTTGACCAGGCAGACTACTGTTCTCAGGTTGGGCTTAAGCGGGCGGTGGAGAGTGGGATAGTGAAGAGAAAGAACGGAGGAGATCATGAAGAAG ATGACGCCGTTGAGGAGATGGTCGGGATGGGGGATGCGATTGTTATACTGAGCTGCGAGAGCTTTAGTTCCAGGTCTAGGGGTTGCTCTCCTACGTCGAA GCAGAAGGTGAACGACGATTGGGTGCAGAAGGAAGAAGGGAGGAGTAGGGGTGCAAGTCCTTGTGGGTCGTTGGATTTGAACATTTGCCTTGATGATGAC GATGAGGAGGAGGAAGAGAAGTCAATTGATGATCTTGGGTTACTTGAGTCGGTTGATCGCCGGATTGTTTTCAAGTTAGTTCCTCAGGAGTTGTGA
AA sequence Show only first row Show all	>Lus10021291 pacid=23178217 polypeptide=Lus10021291 locus=Lus10021291.g ID=Lus10021291.BGIv1.0 annot-version=v1.0 MRTGGCSVQQALTPEAANLVKQAVTLARRRGHAQVTPLHVANTMLAASTGILRTACLQSHNHPLQCRALELCFNVALNRLPASTSSGPMLGGPHHLHQPQ YPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSPQTTANSNTSSKSKENNSNKP QSSTGAVTAALDDPIRKEDVVSVIENLVSNRSRRRGVVIVGECLSIAEGVLKGVMEKVENGEIPEVLRGAKFVSLSFGQLCTVEEVEQKVEEVKGIVRSY MNKGVILNLGDIKWATDCRDGEMRSMEHLIMEIGKLAWGIGSDQHQSNDRFWMVGVSTFQTYTKCKSTTPGSHPSSSSPSSSSLESVWGLHPVTIPAGIL RLSLITTDSDLGRSQCSNNNSKAAGNGSSNNSSWIIIQEGDEPKQEPNCCSSGEYYSNNERGGRTGSSSCRLGNNNNSTCYNSCSDSPTTTPTSSQLPAW LQPYKTYTNPPPPPPHHQDAVSIKDLCRRWNSSSSLNHHYDSSYSSPDDHYSGRMKTLTFASLVSPSPSSISSYHLDHQQQWPSINNQPPWMRSSASPHP HWTTKTLTPIDNPNNHQRPPPLFITPTASTPNSHSTTTPNSTSSSEAATDLSESVLQPRFKELNSENLKTLCTVMEKQVPWQRHVIPDIASTILQCRSGM VRRRRLPDVDSDVVVAAAAKEDTWLFFQGADADAKEKIARELARAVFGSHNRLVSIALSSFSSTEDSRSWYKKRGRSEEKSYMERFAEEVRRDPHRVFLV EDVDQADYCSQVGLKRAVESGIVKRKNGGDHEEDDAVEEMVGMGDAIVILSCESFSSRSRGCSPTSKQKVNDDWVQKEEGRSRGASPCGSLDLNICLDDD DEEEEEKSIDDLGLLESVDRRIVFKLVPQEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	1.0	0.9819
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	2.0	0.9402
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	2.4	0.9245
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	3.7	0.9140
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	4.0	0.9239
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	4.2	0.9006
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	5.0	0.9193
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	5.7	0.8903
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	6.9	0.9138
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	7.1	0.8940

Compare expression of checked genes

Lus10021291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.