Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 338 / 3e-113 Eukaryotic aspartyl protease family protein (.1) AT5G45120 125 / 1e-31 Eukaryotic aspartyl protease family protein (.1) AT2G03200 100 / 2e-23 Eukaryotic aspartyl protease family protein (.1) AT3G25700 100 / 5e-23 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 97 / 9e-22 Eukaryotic aspartyl protease family protein (.1) AT3G59080 82 / 1e-16 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 79 / 1e-15 Eukaryotic aspartyl protease family protein (.1) AT3G54400 74 / 3e-14 Eukaryotic aspartyl protease family protein (.1) AT1G66180 72 / 1e-13 Eukaryotic aspartyl protease family protein (.1) AT1G25510 71 / 2e-13 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004204 [exp] 397 / 1e-136 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 394 / 2e-135 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 380 / 3e-130 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10013325 [exp] 156 / 5e-45 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1) Lus10005212 [exp] 152 / 1e-43 AT3G52500 145 / 2e-40 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 115 / 3e-28 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008513 [exp] 115 / 4e-28 AT4G16563 493 / 7e-172 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 109 / 3e-26 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 109 / 3e-26 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204700 [exp] 372 / 1e-126 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 370 / 5e-126 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 297 / 2e-97 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 119 / 1e-29 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 115 / 2e-28 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 115 / 3e-28 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 111 / 6e-27 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 91 / 5e-20 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G306200 [exp] 89 / 2e-19 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 89 / 3e-19 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10021293 pacid=23178155 polypeptide=Lus10021293 locus=Lus10021293.g ID=Lus10021293.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCACCTTCCACTCTCTTCTCCTTCATCTTTATCCTCATCTCCACCGCCTCCGCCGCCACCATTACCATCCCACTCTCCCCTTACTCCACCT CCTCCTCCGCCGCTCCGCCTCTTCACGAAATCCTCTCCCACCTCGCTTCCACCTCCCTCTCCAGAGCTCTCAAACTCAAACACTCTTCTCCTCCTCCTTC TTCTTCTTCTTCTTCCTCCTCTTCTCTAGTCACCACTCCTCTCTTCCCCCGGAGCTACGGCGGATACTCAATCTCCCTAAGCTTCGGAACTCCTCCGCAG ACCACCAAGTTCGTCATGGACACCGGAAGCACCCTCGTCTGGTTCCCCTGCACATCCCGCTACCTCTGTTCCCGCTGCAACTTCCGCAACGTCGATCCAA CCAACATTACCACATTCATCCCTAAGAAATCCTCCACCGCCAAGCTCATCGGCTGCAAGAACCCCAAATGCCAGTGGATTTACGGCCCAAACGTTGCCAA AACCTGCCCCGGATGCGATTCTGGCCCCAAAAGCGGACCCAATTGTACACAAAGTTGTCCTGCTTACTCGATTCAGTACGGCTCCGGAGCTACCGCGGGC CTTCTTATCTCCGAAACGCTGGACCTCTCCGCTGACAAAACCGTCTCCGATTTCCTAGTCGGATGTTCGTTTCTGTCGATTCGGCAGCCGGAAGGAATCG CCGGATTCGGCCGCGGACTCGACTCGCTTCCTTATCAAGTCGGTGCGAAGAGATTCTCTTACTGCTTGGTCTCTCACCGATTCGACGAGACCTCTGTTTC CAGCGACCTAGTTCTGGATCTGGATTCGGATAAAAAGACGAATAAGAAGACCACCGGGCTAAGCTACACTCCGTTCCAGAAGAATCCAGACTCTTCCAAT TCGGCTTTCCAGACCTACTACTATTTGATGCTCCGCCAGATCCTCGTCGGAGGGAAGCGGGTGAAAGTTCCGTACAAGTATCTGGAGCCGAGCAAATCAG ACGGCAACGGCGGCACGATTGTGGATTCCGGAACGACTTTCAGTTACATGGAGGGCAACGACTTGCAGTTACATGGAGGGCCCCGTTTATGA
AA sequence Show only first row Show all	>Lus10021293 pacid=23178155 polypeptide=Lus10021293 locus=Lus10021293.g ID=Lus10021293.BGIv1.0 annot-version=v1.0 MAPSPSTLFSFIFILISTASAATITIPLSPYSTSSSAAPPLHEILSHLASTSLSRALKLKHSSPPPSSSSSSSSSLVTTPLFPRSYGGYSISLSFGTPPQ TTKFVMDTGSTLVWFPCTSRYLCSRCNFRNVDPTNITTFIPKKSSTAKLIGCKNPKCQWIYGPNVAKTCPGCDSGPKSGPNCTQSCPAYSIQYGSGATAG LLISETLDLSADKTVSDFLVGCSFLSIRQPEGIAGFGRGLDSLPYQVGAKRFSYCLVSHRFDETSVSSDLVLDLDSDKKTNKKTTGLSYTPFQKNPDSSN SAFQTYYYLMLRQILVGGKRVKVPYKYLEPSKSDGNGGTIVDSGTTFSYMEGNDLQLHGGPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021292 [exp]	1.0	0.9063
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	3.2	0.8852
AT3G52500			Eukaryotic aspartyl protease f...		Lus10016967 [exp]	6.0	0.8743
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	8.8	0.8810
AT3G12110		ACT11	actin-11 (.1)		Lus10021057 [exp]	9.2	0.8531
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	10.6	0.8412
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	11.6	0.8204
AT2G20820			unknown protein		Lus10033715 [exp]	12.7	0.8467
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	13.2	0.8413
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10014853 [exp]	15.0	0.8203

Compare expression of checked genes

Lus10021293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.