Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27250 330 / 7e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G42800 204 / 2e-62 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G61720 167 / 1e-48 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 160 / 4e-46 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G19440 160 / 4e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 158 / 2e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 151 / 1e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 151 / 4e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 148 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 148 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016968 [exp] 454 / 5e-161 AT4G27250 252 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10041031 [exp] 209 / 1e-64 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 174 / 3e-51 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 171 / 1e-49 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 160 / 3e-46 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 159 / 9e-46 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 158 / 3e-45 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 155 / 2e-44 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 154 / 2e-43 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415500 [exp] 375 / 3e-129 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G229500 [exp] 215 / 1e-66 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G033600 [exp] 211 / 2e-65 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.004G030700 [exp] 174 / 5e-51 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 173 / 6e-51 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 167 / 9e-49 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 166 / 2e-48 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 165 / 5e-48 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 160 / 3e-46 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 160 / 3e-46 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10021294 pacid=23178171 polypeptide=Lus10021294 locus=Lus10021294.g ID=Lus10021294.BGIv1.0 annot-version=v1.0 ATGGAGTCGGTGGAGGAGAAAGGGAACAAGGTAGGAAACAGAAGAAGGTACTGTGTCACAGGCGCCAATGGCTACATCGGATCTTATCTAGTGAAGCATC TCCTCCAATCCGGCGCCTCCGTTCACGCCACTCTCCGCAATCCATCTCACAACTCCGTTCAACGCCATCTCCTCCCCTTCTGGAAATCATCATCAGGCAG TAACATCAACAACCGATTGCATCTCTTCAAAGCCGATCTCCAACAACCAGGCAGCTTCGACGATGCCGTCAACGGCTGCCACGGCGTCTTCCACGTAGCA GCGTCAATGCAATTCCACATCCCTTCCGATCATCAGACCACCGACAGCAGCGTTGACCACTACGTAGATACGAAAATCATTCGCCCGGCAATCGAAGGAA CACTCAATCTGCTAAAATCATGCTCGAAATCATCCGTGAAAAGGGTAGTCTTCACATCTTCAGTCAGCACCCTGACGGGTAAGAACCCGGACGGGTTGTG GAAACGGGTCGTTGACGAAACCTGCCAGGCTGGCGTTGACCGGATCCGGAAAAACAGAGCGAGCGGGTGGGTCTACGCGCTCTCCAAGCTCCTCACGGAA GAAGCTGCGTTCGAGTATTGTAAAGAGAACGCGATTGATTTGGTCTCCGTTGTAACGTCCACGGTGGCAGGTCCGTTCCTTACTGAAACTGTTCCCTCCA GCATTCGAGTTCTCTTGTCACCCGTAACGGGAGATTCGAGCTTCTTGTCGATACTGTCGGCGGTGAGTGAGAGAATGGGTTCGATTGGTTTGGTTCACTC GGAGGATGTGTGCAGTGCGCATTTTTTCTTGATGGAGCATCCGAGAGCTCAAGGTAGATACTTGTGTTGCAAAGGGAGTTGCTTGCTGCCTGAATTGGTT GATCTACTGATTGAAGAACGGCATAACACTTGTTCAAATGCTCATAGGAGTGGTACAGTGGGGGACACAAGTTCTGCTGTGCCATGTGAGTTCTCCTCGA GGAAGTTGCGAGAGCTGGGGTTCGAGTTTGAGCATGACATTCCATGTATAATTCGTGAAACCATCGGTTGCTGCATCGAGAAGGGCCTCCTACTGCTTGA CATTGATGAACAGAAATGA
AA sequence Show only first row Show all	>Lus10021294 pacid=23178171 polypeptide=Lus10021294 locus=Lus10021294.g ID=Lus10021294.BGIv1.0 annot-version=v1.0 MESVEEKGNKVGNRRRYCVTGANGYIGSYLVKHLLQSGASVHATLRNPSHNSVQRHLLPFWKSSSGSNINNRLHLFKADLQQPGSFDDAVNGCHGVFHVA ASMQFHIPSDHQTTDSSVDHYVDTKIIRPAIEGTLNLLKSCSKSSVKRVVFTSSVSTLTGKNPDGLWKRVVDETCQAGVDRIRKNRASGWVYALSKLLTE EAAFEYCKENAIDLVSVVTSTVAGPFLTETVPSSIRVLLSPVTGDSSFLSILSAVSERMGSIGLVHSEDVCSAHFFLMEHPRAQGRYLCCKGSCLLPELV DLLIEERHNTCSNAHRSGTVGDTSSAVPCEFSSRKLRELGFEFEHDIPCIIRETIGCCIEKGLLLLDIDEQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	0	1
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	3.0	0.8033
					Lus10038131 [exp]	4.2	0.7618
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	8.9	0.7373
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	9.6	0.7910
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10014294 [exp]	13.1	0.7474
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	14.5	0.7536
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10042180 [exp]	15.2	0.7136
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	23.8	0.7524
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	25.3	0.7576
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	27.2	0.7558

Compare expression of checked genes

Lus10021294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.