Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13580 408 / 3e-146 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G44120 407 / 1e-145 Ribosomal protein L30/L7 family protein (.1.2) AT2G01250 404 / 8e-145 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 196 / 2e-62 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016970 [exp] 461 / 3e-167 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10029423 [exp] 454 / 4e-164 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10004220 [exp] 452 / 1e-163 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10040040 [exp] 232 / 2e-76 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10019603 [exp] 232 / 2e-76 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 73 / 2e-14 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G008000 [exp] 400 / 5e-143 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.010G250900 [exp] 396 / 2e-141 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.006G073200 [exp] 393 / 3e-140 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.018G140300 [exp] 390 / 5e-139 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 235 / 5e-78 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 230 / 8e-76 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [flax] [poplar] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [flax] [poplar] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021296 pacid=23178187 polypeptide=Lus10021296 locus=Lus10021296.g ID=Lus10021296.BGIv1.0 annot-version=v1.0 ATGGCGGAAGTAGCTAAGGCAGCAGCTATTGTTCCTGAATCTGTTTTGAAGAAAAGGAAGAGAGAGGAGGAGTGGGCTTTGGCCAAAAGCCAAGCAGTCG TTGCTCAGAAAAAGAAGAGTGCTGAGAACAGAAAGATCATCTTCAAGAGGGCTGAGCAGTATGCCAAGGAGTACAAAGAGCAGGAGAGGGAACTGATCAG GTTGAAGAGGGAGGCTAAACTTAAGGGAGGTTTCTATGTTAGCCCTGAGGCCAAGTTGTTGTTCATTGTTCGCATTCGTGGTATTAACGCTGTTGACCCT AAGACTAAGAAGATTTTGCAGCTTCTTCGCCTGCGACAGATATTCAATGGGGTATTCCTCAAGGTTAACAAGGCTACTGTAAACATGCTCCGCAGAGTTG AGCCATATGTTACTTATGGATACCCTAACCTGAAGAGCGTGAAGGAGCTGATCTATAAGAGGGGTTTCGGTAAGCTAGAGAAACAAAGAATTCCTTTGAC CGACAATGCCATTGTTGAGAAGGGACTTGGGAAGTTCGGTATCATCTGCGTGGAAGACCTGATCCATGAGATCATGACCGTCGGCCCTCATTTCAAGGAG GCAAACAACTTCCTGTGGCCATTTAAGCTGAGCGCTCCCTTGGGTGGGTTGAAGAAAAAGCGTAACCATTATGTGGAAGGTGGTGACGCTGGAAACCGTG AGGATTTCATTAACGCCCTCATCAGGAGGATGAACTAG
AA sequence Show only first row Show all	>Lus10021296 pacid=23178187 polypeptide=Lus10021296 locus=Lus10021296.g ID=Lus10021296.BGIv1.0 annot-version=v1.0 MAEVAKAAAIVPESVLKKRKREEEWALAKSQAVVAQKKKSAENRKIIFKRAEQYAKEYKEQERELIRLKREAKLKGGFYVSPEAKLLFIVRIRGINAVDP KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLEKQRIPLTDNAIVEKGLGKFGIICVEDLIHEIMTVGPHFKE ANNFLWPFKLSAPLGGLKKKRNHYVEGGDAGNREDFINALIRRMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	0	1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	2.0	0.8918
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	2.0	0.9207
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	3.2	0.9093
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	4.2	0.8679
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	4.6	0.8782
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	5.5	0.8984
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	6.5	0.8820
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	6.7	0.8863
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	8.5	0.8728
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	11.3	0.8498

Compare expression of checked genes

Lus10021296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.