Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36000 242 / 2e-78 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT2G34620 177 / 2e-53 Mitochondrial transcription termination factor family protein (.1) AT2G03050 150 / 3e-43 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT3G18870 117 / 5e-31 Mitochondrial transcription termination factor family protein (.1) AT4G14605 95 / 2e-21 Mitochondrial transcription termination factor family protein (.1) AT1G78930 93 / 1e-20 Mitochondrial transcription termination factor family protein (.1) AT5G55580 89 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT2G21710 89 / 3e-19 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 63 / 4e-11 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G02990 62 / 1e-10 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016971 [exp] 545 / 0 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10029422 [exp] 314 / 4e-106 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 303 / 3e-102 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10030451 [exp] 151 / 2e-43 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10032120 [exp] 149 / 2e-42 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 148 / 4e-42 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10014567 [exp] 144 / 3e-40 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10026325 [exp] 103 / 4e-25 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 99 / 9e-24 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072200 [exp] 281 / 5e-93 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 267 / 1e-87 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.011G081400 [exp] 166 / 4e-49 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 140 / 3e-39 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 117 / 6e-31 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 100 / 4e-23 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 99 / 1e-22 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 85 / 3e-18 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 83 / 2e-17 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.008G088100 [exp] 67 / 8e-14 AT2G03050 117 / 7e-34 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10021297 pacid=23178257 polypeptide=Lus10021297 locus=Lus10021297.g ID=Lus10021297.BGIv1.0 annot-version=v1.0 ATGCAGGAAACACTCAATCTAATCTCAAAACCAGTCAAATTCCCTTACCATAATTATGATTCTCCTTCACTTTCTCGTCGCCCTAGAGCTCAGTTCAAAT TCCCTCCCAACATCTCATCGAAGACAATTACCGCCGTCGCCGCCCCTCCGCCACCGCGGCCACCAGCTCCACCTCCACCTCCATCCGATTTCCAGGAGAA GATCTACTACCTCGACTCAATCGGACTCGACGCGTTCTCCCTAGTCACCGACCACCGCCCAATCCTCCTATCCGCCTCTCTCTCCAACATCAAATCCGCC ATTGAATACCTCACCACGATGGACTTCAACTCCCACGACTTCCGCCGCATCGTCACTCTGTGCCCCCAATTCCTCGCCTCCGCCAGCGCCTCCACCTTAA TCCCGGTCTTCACCTTCCTCCTCCGCGAGGCCGGCGTCCAGCGTTGGAACATACGGCGAGTCATCCAGCGCCGCCCAAAGCTGCTCCTCTGCAGCGTGGA GAACCAGCTCCGGCCGAGCCTGCATTTCCTCCACTCAATCGGCATCCCCACGGAGTACAGGCACGCCTACCTGCTCTGCTGCAGCGTTGAAGGGCTGCTT GTCCCTCGGGTCCGGTACTTCCAGGACCTTGGATTATCGTACCGGGAGTCGGCGTCAATGTTCCAGAGGTGCCCGCAGCTGTTCAGTTACAGCATGAAGG AGAACATAGTGCCGAAGCTGGAGTACTATGTGGAGGAGATGCGGAGGGAACTGAAGGAACTGAAGGAATTTCCGCAGTATTTTTCGTTCAGCTTGGAGGA TCGGATTAAGCCTAGGCATCTTTGCTGCGTTGAGAGAGGGGTGTGTTTGCCTTTGGCGGTGTTATTGAGGACGAAGGATAGTCATTTCCGACGGAGGTTG CAGTACCTTTCTGACTCTTTGCTTCCGTTGAGGTCTTCTCCGTTAGCCAGTGTAGATTACGAACCTCCTTCTTAG
AA sequence Show only first row Show all	>Lus10021297 pacid=23178257 polypeptide=Lus10021297 locus=Lus10021297.g ID=Lus10021297.BGIv1.0 annot-version=v1.0 MQETLNLISKPVKFPYHNYDSPSLSRRPRAQFKFPPNISSKTITAVAAPPPPRPPAPPPPPSDFQEKIYYLDSIGLDAFSLVTDHRPILLSASLSNIKSA IEYLTTMDFNSHDFRRIVTLCPQFLASASASTLIPVFTFLLREAGVQRWNIRRVIQRRPKLLLCSVENQLRPSLHFLHSIGIPTEYRHAYLLCCSVEGLL VPRVRYFQDLGLSYRESASMFQRCPQLFSYSMKENIVPKLEYYVEEMRRELKELKEFPQYFSFSLEDRIKPRHLCCVERGVCLPLAVLLRTKDSHFRRRL QYLSDSLLPLRSSPLASVDYEPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10021297 [exp]	0	1
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	1.0	0.9479
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	6.3	0.9005
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	6.5	0.8964
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	8.0	0.8705
AT2G33855			unknown protein		Lus10015404 [exp]	11.5	0.8887
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	15.6	0.8798
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	16.4	0.8921
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	17.2	0.8854
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	17.6	0.8808
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	19.5	0.8904

Compare expression of checked genes

Lus10021297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.