Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36020 202 / 5e-65 HVA22J HVA22-like protein J (.1) AT5G42560 188 / 3e-59 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G75700 176 / 8e-56 HVA22G HVA22-like protein G (.1) AT1G19950 179 / 3e-55 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT4G36720 67 / 2e-13 HVA22K HVA22-like protein K (.1) AT2G42820 52 / 1e-08 HVA22F HVA22-like protein F (.1) AT5G50720 51 / 2e-08 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 49 / 2e-07 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT1G74520 42 / 7e-05 ATHVA22A HVA22 homologue A (.1) AT1G69700 41 / 0.0002 ATHVA22C HVA22 homologue C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016974 [exp] 426 / 4e-154 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10029419 [exp] 306 / 2e-106 AT2G36020 198 / 1e-63 HVA22-like protein J (.1) Lus10004215 [exp] 260 / 3e-89 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10024332 [exp] 198 / 5e-63 AT5G42560 330 / 9e-114 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10033152 [exp] 196 / 4e-62 AT5G42560 328 / 7e-113 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10034519 [exp] 196 / 5e-62 AT5G42560 324 / 2e-111 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10010093 [exp] 64 / 2e-12 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10007215 [exp] 62 / 1e-11 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10031386 [exp] 51 / 6e-08 AT2G42820 246 / 4e-85 HVA22-like protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205300 [exp] 233 / 3e-77 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.016G072600 [exp] 225 / 5e-75 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.005G237900 [exp] 202 / 2e-64 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.002G023500 [exp] 198 / 4e-63 AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 184 / 3e-58 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.007G029300 [exp] 72 / 5e-15 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.009G113400 [exp] 68 / 7e-14 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.014G148600 [exp] 48 / 4e-07 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.012G101600 [exp] 46 / 2e-06 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G099700 [exp] 45 / 4e-06 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10021299 pacid=23178266 polypeptide=Lus10021299 locus=Lus10021299.g ID=Lus10021299.BGIv1.0 annot-version=v1.0 ATGTTGGGGGAATTCGTGAATAGATGCCTTCTATTGTTTTTCGGGTATGCATACCCGGCTTTCGAATGTTTCAAGTCCACGGAGAGGTACAAGATCAACA TGGAAGAAGTCAGATTCTGGTGCCAATATTGGATCATTGTTGCCCTTTTCACAGTCTGTGAGAGATTTGGGGACTTCTTCTTGTCTTGGCTGCCCTTCTA CGGCGAGGCCAAGTTGGGATTCTTCATCTGGTTATGGTACCCCAAAACCAAGGGAAGTTCCTTCGTGTACAATACATTATTGAAGCCATACGTATCCCAA CATGAGTCAGAGATAGACCAGAGGCTACAAGAGGTTAAGGTTAAAGTATGGGACTTCGCCATTTACTATTGGCAGAACTGCACCAAGCTCGGTTCCACCA CCATCTTCCAGGTTCTTGAACAGTTGGCTACTCAATCTGGCAGGTTCGGCAACGGCCCCAAGCCTCAGAAGAAGACCGGAACTGCTGTACCGGTAGCTCC GCCACCGCCGGAGTCGCCAACGGCCAGGAGGAGCGGAAGTGGACGGTGGACGCCGCGAGCTGCCAGCAGACTGAACCGTGAGTCGGGGGCAGATTCGCCG AGATTCCAGGACGCCGATGATCTCCAGCAGGCCAAGATGAGGCTCCGCCGATCAAACCCTATCTCTTGA
AA sequence Show only first row Show all	>Lus10021299 pacid=23178266 polypeptide=Lus10021299 locus=Lus10021299.g ID=Lus10021299.BGIv1.0 annot-version=v1.0 MLGEFVNRCLLLFFGYAYPAFECFKSTERYKINMEEVRFWCQYWIIVALFTVCERFGDFFLSWLPFYGEAKLGFFIWLWYPKTKGSSFVYNTLLKPYVSQ HESEIDQRLQEVKVKVWDFAIYYWQNCTKLGSTTIFQVLEQLATQSGRFGNGPKPQKKTGTAVPVAPPPPESPTARRSGSGRWTPRAASRLNRESGADSP RFQDADDLQQAKMRLRRSNPIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	0	1
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	2.0	0.9655
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	2.4	0.9728
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	3.0	0.9580
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	3.3	0.9561
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	4.5	0.9672
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	5.7	0.9667
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	6.3	0.9428
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	6.7	0.9409
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	7.7	0.9649
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	7.9	0.9588

Compare expression of checked genes

Lus10021299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.