Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11620 354 / 2e-122 BAS1 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004214 [exp] 413 / 1e-145 AT3G11620 309 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10016976 [exp] 351 / 5e-123 AT3G11620 186 / 1e-58 alpha/beta-Hydrolases superfamily protein (.1.2.3.4) Lus10016975 [exp] 111 / 1e-30 AT3G11620 79 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072700 [exp] 385 / 1e-134 AT3G11620 411 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF10230 [flax] [poplar] LIDHydrolase Lipid-droplet associated hydrolase
Representative CDS sequence Show only first row Show all	>Lus10021300 pacid=23178170 polypeptide=Lus10021300 locus=Lus10021300.g ID=Lus10021300.BGIv1.0 annot-version=v1.0 ATGGGCGCCGAGTATTTGGACGCTGAGGCTGTGAAATCTGCGAATTTTCGACTGTGCAAGGTTTCAAGTTACACAACGGAACTGCTAGAGATTCAATCAG ATGATCCAACTCTGCATGTTCTCTTTGTCCCTGGAAATCCAGGTGTTGTTTCATTTTACAAGGAGTTTCTGGAGTCGCTTTATGCAGCCATTGGACACAT CGCTCATACAAAAAAGAACTACGAGCAAGGGAAGTTGTTCTCATTACAACAACAGATAAACCATAAGGTGGATTTCATCAGCAAGGAACTAAAAGAGACT AAAGTTCCAATAGTATTGGTTGGGCACTCCATTGGTTCACACATAGCAATGGAAACACTGAGGCAAAAGGGAGATAAGGTTATATACTTCGTCGGGTTAT ACCCTTTTATTATGTCAAATCCACTTTCGAAGAAGCAAGCAAGTATTGCGAAAGTTTCGAGATCCCCTTTTCTGAGTGGGCTGATGAGTTTCATGGTAGC GTTTATCGGAATTCTTCCCAAGTGGCTTGCCAGGTACGTGGTGTTAAAGTATATTGGCAACAGCACATGGTCTAATTCAGCTGTTGAGACTGCTCAAGGT TATTTGCTGAAGACTGTGAGGTCTAATCTATATTACGTGATTCAATTTGGCATACAGTACCATGTGTTTCGGAACATGCTTCATATGGTAATGACAGAAT TCCAGGAGCTTTCACAGGCACCGGACTGGGAATTCATGAGAGAAAACCACAGTAGAATGGCATTCTTGTTTGGTGTTGATGATCACTGGGGGCCGTTGCA AGTATATGAAGATATCGCGAAGCACGTCCCTGAAATGACTTTAGCGATCGAAAGAGAAGGCCATTCCCACAGTTTCTGCTGCACCGAGGCTGGGTCGGTA TGGGTTGCTCGGCATGTCGCTAGCATGATACAGAATCAGACGACCTCAATGGTAGTGGCAGCAGATGGCGAGAGGCTCACCCACATTGACGTTGCATAG
AA sequence Show only first row Show all	>Lus10021300 pacid=23178170 polypeptide=Lus10021300 locus=Lus10021300.g ID=Lus10021300.BGIv1.0 annot-version=v1.0 MGAEYLDAEAVKSANFRLCKVSSYTTELLEIQSDDPTLHVLFVPGNPGVVSFYKEFLESLYAAIGHIAHTKKNYEQGKLFSLQQQINHKVDFISKELKET KVPIVLVGHSIGSHIAMETLRQKGDKVIYFVGLYPFIMSNPLSKKQASIAKVSRSPFLSGLMSFMVAFIGILPKWLARYVVLKYIGNSTWSNSAVETAQG YLLKTVRSNLYYVIQFGIQYHVFRNMLHMVMTEFQELSQAPDWEFMRENHSRMAFLFGVDDHWGPLQVYEDIAKHVPEMTLAIEREGHSHSFCCTEAGSV WVARHVASMIQNQTTSMVVAADGERLTHIDVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	0	1
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	1.7	0.8710
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	5.9	0.7817
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	7.1	0.8472
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	7.2	0.8469
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	11.0	0.7724
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	11.2	0.8321
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	15.0	0.8124
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	15.5	0.8480
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	17.0	0.8272
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	17.5	0.7982

Compare expression of checked genes

Lus10021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.