Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01390 103 / 1e-29 AVMA10, VMA10 vacuolar membrane ATPase 10 (.1.2) AT4G23710 87 / 3e-23 VAG2 ,VATG2 ,VHA-G2 vacuolar ATP synthase subunit G2 (.1) AT4G25950 70 / 1e-16 VATG3 vacuolar ATP synthase G3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016977 [exp] 148 / 2e-47 AT3G01390 129 / 4e-40 vacuolar membrane ATPase 10 (.1.2) Lus10029418 [exp] 134 / 9e-42 AT3G01390 143 / 7e-46 vacuolar membrane ATPase 10 (.1.2) Lus10004213 [exp] 133 / 2e-41 AT3G01390 143 / 9e-46 vacuolar membrane ATPase 10 (.1.2) Lus10001543 [exp] 76 / 1e-18 AT4G25950 123 / 8e-38 vacuolar ATP synthase G3 (.1) Lus10009452 [exp] 74 / 4e-18 AT4G25950 123 / 7e-38 vacuolar ATP synthase G3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040300 [exp] 126 / 8e-39 AT3G01390 145 / 2e-46 vacuolar membrane ATPase 10 (.1.2) Potri.010G222000 [exp] 125 / 2e-38 AT3G01390 147 / 2e-47 vacuolar membrane ATPase 10 (.1.2) Potri.019G080700 [exp] 83 / 1e-21 AT4G25950 120 / 8e-37 vacuolar ATP synthase G3 (.1) Potri.013G108300 [exp] 65 / 9e-15 AT3G01390 64 / 2e-14 vacuolar membrane ATPase 10 (.1.2) Potri.019G133701 [exp] 48 / 2e-08 AT4G25950 74 / 1e-18 vacuolar ATP synthase G3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF03179 [flax] [poplar] V-ATPase_G Vacuolar (H+)-ATPase G subunit
Representative CDS sequence Show only first row Show all	>Lus10021301 pacid=23178286 polypeptide=Lus10021301 locus=Lus10021301.g ID=Lus10021301.BGIv1.0 annot-version=v1.0 ATGGAGCCCGGCCGTGGTCTGAATGGAATTCAACTCCTCCTAGCTGCAGAGCAAGAAGCTCAGCAGATTGTCACCACTTCCAGAAATGCAAAAATTGCTA GGCTGAAACAAGCCAAGGACGAGGCTGAGAAGGAAGCTGCTGAATTCCGTGCCCAAATGGAAGCTCAATTTCAGAAAAAGCTAACAGATACCAGTGGGGA CTCGGGGGCTAACGTTAAACGTCTGGAGGAAGAGACGACGGTAAAGATCGGTGGCCTAAAGACTGATGCTGCCAGAATCTCCCATGAAGTTGTGGACATG CTCCTGAGGCATGTGACCACCTACAGGTTCGGATGGGCAATTGCAGATTGTTCGACTTGA
AA sequence Show only first row Show all	>Lus10021301 pacid=23178286 polypeptide=Lus10021301 locus=Lus10021301.g ID=Lus10021301.BGIv1.0 annot-version=v1.0 MEPGRGLNGIQLLLAAEQEAQQIVTTSRNAKIARLKQAKDEAEKEAAEFRAQMEAQFQKKLTDTSGDSGANVKRLEEETTVKIGGLKTDAARISHEVVDM LLRHVTTYRFGWAIADCST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	0	1
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	1.0	0.9107
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	2.0	0.8390
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	4.2	0.8360
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031323 [exp]	5.7	0.7767
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10026910 [exp]	6.2	0.7692
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10001986 [exp]	6.7	0.7795
AT1G77350			unknown protein		Lus10018864 [exp]	6.7	0.7936
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	7.5	0.7973
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	10.6	0.7892
AT5G53650			unknown protein		Lus10032946 [exp]	11.0	0.7788

Compare expression of checked genes

Lus10021301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.