Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52525 118 / 1e-33 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 115 / 3e-32 OFP Ovate family protein (.1) AT2G36030 99 / 3e-27 unknown protein AT5G19650 82 / 6e-19 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 81 / 3e-18 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT4G18830 67 / 5e-13 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G22240 64 / 2e-12 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT5G58360 64 / 4e-12 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT2G30400 64 / 4e-12 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT1G06920 63 / 1e-11 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016978 [exp] 244 / 4e-82 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10005206 [exp] 94 / 3e-23 AT3G52525 82 / 2e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10013318 [exp] 94 / 4e-23 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10041730 [exp] 86 / 5e-20 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10011092 [exp] 83 / 8e-19 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 82 / 2e-18 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10008589 [exp] 71 / 2e-14 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10014164 [exp] 69 / 2e-14 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10042224 [exp] 71 / 3e-14 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072800 [exp] 179 / 4e-57 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 154 / 5e-47 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.009G161700 [exp] 100 / 3e-26 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.004G200500 [exp] 96 / 1e-24 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.007G028000 [exp] 91 / 2e-21 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 89 / 1e-20 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 89 / 1e-20 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.006G156176 [exp] 86 / 8e-20 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 81 / 4e-18 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.004G062100 [exp] 72 / 1e-14 AT4G18830 104 / 9e-25 ovate family protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10021302 pacid=23178279 polypeptide=Lus10021302 locus=Lus10021302.g ID=Lus10021302.BGIv1.0 annot-version=v1.0 ATGTCAGGGAAGAAAAAGGTAATCTTCAACACCGTCGCCGTCGACTTGGGCTGCGGCAGCTGCCGGAGACCCAAACGGCTCCTCTCATCCATCTTCCACC CAAAACCAAAACAACAATACTACCGCAAACACCACAACAACAACAACAACAACAAATACACCAACCCCTATTTCACCAAAACGACGCCTTCTTACTACAA CAACTCCTCCTCCTCCTCAACCCCGTACGACAGCAGCGTCCCCACCACGGCTGCGACATTTTCCCCCATGGCGGAGGAAGACGAAGACGAGGAAGAGGAT GCAAAGACGGTGAGGGGATTCGGGCGCGTGGGAGGGGAGAGCATGGCGGTGGAGAAGGACTCCGACGACCCGTACTTGGATTTCAGGCAGTCGATGCTGC AGATGATTCTGGAGAAGGAGATTTACTCAAAGGAAGAGCTGAGAGAGCTTCTAAACTGCTTCCTCCAGCTCAATTCCCCTTACCACCACGGCATTATCGT CCGGGCCTTCTCAGAAATCTGGAACAGTGTGTTGTCAGTTAAGGCCGGCGGTGGTGGTGGTTCGGGTAGTTCAAAGACGGTGGCTCCTTCGCCATCGCCG CCGCAGCAGAGGTGGCCAGGAGGGCAGTACTATAATTACAACAATGGATGGAATTAG
AA sequence Show only first row Show all	>Lus10021302 pacid=23178279 polypeptide=Lus10021302 locus=Lus10021302.g ID=Lus10021302.BGIv1.0 annot-version=v1.0 MSGKKKVIFNTVAVDLGCGSCRRPKRLLSSIFHPKPKQQYYRKHHNNNNNNKYTNPYFTKTTPSYYNNSSSSSTPYDSSVPTTAATFSPMAEEDEDEEED AKTVRGFGRVGGESMAVEKDSDDPYLDFRQSMLQMILEKEIYSKEELRELLNCFLQLNSPYHHGIIVRAFSEIWNSVLSVKAGGGGGSGSSKTVAPSPSP PQQRWPGGQYYNYNNGWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	0	1
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	2.0	0.9195
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	2.4	0.8859
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	5.7	0.8795
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	6.7	0.8605
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	14.5	0.8480
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	18.9	0.8471
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	19.6	0.8366
AT3G02645			Plant protein of unknown funct...		Lus10026964 [exp]	24.0	0.8229
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	24.9	0.8126
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	25.3	0.8472

Compare expression of checked genes

Lus10021302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.