Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04820 94 / 3e-22 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT2G36050 86 / 3e-19 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 79 / 1e-16 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT1G79960 64 / 3e-11 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G18500 59 / 1e-09 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT4G14860 57 / 2e-09 OFP ATOFP11 ovate family protein 11 (.1) AT5G19650 56 / 5e-09 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT1G05420 54 / 4e-08 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT5G58360 54 / 4e-08 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G22240 53 / 5e-08 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016979 [exp] 314 / 3e-107 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043433 [exp] 85 / 1e-18 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10034150 [exp] 83 / 4e-18 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10010554 [exp] 63 / 2e-11 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10043406 [exp] 59 / 3e-10 AT5G04820 64 / 1e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10006120 [exp] 60 / 7e-10 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006912 [exp] 57 / 3e-09 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10014677 [exp] 56 / 7e-09 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10041730 [exp] 56 / 1e-08 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072900 [exp] 145 / 3e-41 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 134 / 3e-37 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G017500 [exp] 118 / 1e-31 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 115 / 1e-30 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 86 / 2e-19 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.005G211300 [exp] 73 / 1e-14 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.008G153500 [exp] 70 / 7e-14 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 70 / 1e-13 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.002G051200 [exp] 68 / 5e-13 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 67 / 2e-12 AT1G79960 137 / 2e-38 ovate family protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10021303 pacid=23178281 polypeptide=Lus10021303 locus=Lus10021303.g ID=Lus10021303.BGIv1.0 annot-version=v1.0 ATGTTGGGGAAGAAGAAATTAAGATTGAATCCGATCCCTTCTTTTCTCTTCTCCAAATCCATCTCCTCAGATCAATGCTCTTCCTCTTCCTCATCCTCTG TTAAATCATCCTCTGTTTCCTCCTCCTCCTGGCCTTGGACTCCTAACTACTATTACTGCCACCAACAGCCTCGCACTCTCTCCTTCCGCACCACCACCTC CGCCGACATGTTGGATACTAAATACCCACCAGAATCTGCACCTGGGTCTGAGCCCAACAAGCCCAATTCATCGTTTTTCCACAGCTCCCCTGCAGTCGCC GGCGACGGCGGCGGCAACGTGGGTGAGGATCCGCAAGTCGAGAGCGTTATTCGCGGGGCCAAATCGGAGCGGTTGTTCTTCTCTCCTGGAGAGACTAGCT CATCATTACTGCAAGATTCAGAAAAGGGGACGATCGGCGGCGGCGGGGGTGGAGTGGCAGGGGATGCTCTGTTTTCGATTAAGGAGGGCGGAGAAGAAGA AGCCGGAGCGGTGGCGGTGGCGATGGATTCCAAGGATCCGTTCGAGGATTTCAAGAACTCGATGGTGGAGATGGTGGAGGCTCACGGGTTGAAGGATTGG GAGTCTTTGGAGAATCTGTTGAGCTGCTATCTCAGGGTTAATAGGAAGAGCAACCACGGGTACATCGTTGGGGCTTTCGTTGATTTGCTCGTCGGCTTGC CGTCGTTCGGTCCTAAATCGGCCCCGGTAGCGGAGGTGACGGTGGAGGCAGAGGTGGTTTCTGAATCGAACTGTTCTTGTTCGCATCACGGGCATCACCA GAGCCACCACAATCATTACTCGCCGTCGTCTCCGCTGTCGTTCTACACGTCTTTCTCGTCGTCTTCTTCGTCGGAGGACTCGTCTTCGACGCCATGCGTT TCTTCGTCGGAGGTTTACAGAGAGGCGGGGGGAGATGAGATTGAGATCGACGGTGAGGACGAGATTAGTACCCCTTGCGCCGCGGCGTCGTTTGTTGGTG TATCGGAAAGGAGAAAATGA
AA sequence Show only first row Show all	>Lus10021303 pacid=23178281 polypeptide=Lus10021303 locus=Lus10021303.g ID=Lus10021303.BGIv1.0 annot-version=v1.0 MLGKKKLRLNPIPSFLFSKSISSDQCSSSSSSSVKSSSVSSSSWPWTPNYYYCHQQPRTLSFRTTTSADMLDTKYPPESAPGSEPNKPNSSFFHSSPAVA GDGGGNVGEDPQVESVIRGAKSERLFFSPGETSSSLLQDSEKGTIGGGGGGVAGDALFSIKEGGEEEAGAVAVAMDSKDPFEDFKNSMVEMVEAHGLKDW ESLENLLSCYLRVNRKSNHGYIVGAFVDLLVGLPSFGPKSAPVAEVTVEAEVVSESNCSCSHHGHHQSHHNHYSPSSPLSFYTSFSSSSSSEDSSSTPCV SSSEVYREAGGDEIEIDGEDEISTPCAAASFVGVSERRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021303 [exp]	0	1
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	1.0	0.9200
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	5.1	0.8676
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	5.6	0.8091
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	5.7	0.8657
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	11.8	0.8552
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	13.0	0.8336
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	13.7	0.8538
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	14.4	0.8603
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	14.5	0.8545
					Lus10016381 [exp]	15.9	0.7326

Compare expression of checked genes

Lus10021303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.