Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22250 335 / 6e-116 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44260 322 / 7e-111 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 278 / 2e-93 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 273 / 2e-91 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 265 / 1e-88 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 256 / 9e-85 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G06450 132 / 4e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 129 / 9e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 120 / 9e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 111 / 1e-28 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016980 [exp] 565 / 0 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 456 / 2e-163 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 346 / 2e-120 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 278 / 1e-93 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 275 / 2e-92 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 273 / 1e-91 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 273 / 2e-91 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029417 [exp] 226 / 5e-75 AT5G22250 164 / 2e-51 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 148 / 2e-42 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205600 [exp] 386 / 5e-136 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 370 / 1e-129 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 352 / 8e-123 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 342 / 8e-119 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 278 / 1e-93 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 273 / 1e-91 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 269 / 4e-90 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 268 / 1e-89 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 266 / 4e-89 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 263 / 1e-87 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10021304 pacid=23178260 polypeptide=Lus10021304 locus=Lus10021304.g ID=Lus10021304.BGIv1.0 annot-version=v1.0 ATGTCTAAATCCACCGACGAAGAGTCGATCGCCTCCCCGCCGCCGCCGCCTTTTCCTTCTTCGCCCTGCCGACCTGTCATAATCCGATCGGTGTGGGCGG AGAATCTCGTATCGGAGTTCTTGGTAATCCGGAAAGTCGTAGAAAAGTACCCGCTGATTTCCATGGACACGGAGTTCCCAGGCGTTGTGATTCGCGCGCA GGGCGTCGAACAAAGTCATCGATCGCAGGATCCGACGGGAAGGTATGAGATCCTCAAGGCCAACGTTGATGCGCTTAAACTGATCCAGGTAGGGCTCACG CTCGCCGATAAGGAAGGAAATTTGCCGGATCTTGGAACTGGGAATTGTTATATATGGGAATTCAATTTTCGGGATTTCGATGTGTCTTGCGACTATCATG CTCATGACTCCGTTGACCTGTTGAGGAGGCAGGGGATGGATTTCGAGAAAAACAGAAAGGAAGGAGTTGAGGGTGTGAAATTCGCCGAGCTGATGATGTC GTCGGGGCTGGTGTTGGATCCCTCAGTTAGTTGGGTCACATTTCACAGCGCTTATGATTTTGGTTACTTGGTGAAGTGTTTGACTCAGAAGCCTTTGCCC GATGGCTTGACTGAGTTTCTAGATTTGGTGAGAATGTTCTTTGGGGACAACGTTTATGACATTAAGCATTTGATGAAGTTTGGGGCGAACTTGTTTGGTG GGCTTGATAGGACATGCAAGACTTTGGGTGTGGAGCGGGTCACTGGGAAGAGTCACCAAGCTGGTTCAGATAGCTTGGCGACACTCCACGCCTTTCAGAA AATGAGAGAGAAGTACTTCAATGGTAGGGAGGATGGAGCAATAGAAAAGTACGCAAATGTTTTATATGGATTAGAGCTGCCAACTTCATAG
AA sequence Show only first row Show all	>Lus10021304 pacid=23178260 polypeptide=Lus10021304 locus=Lus10021304.g ID=Lus10021304.BGIv1.0 annot-version=v1.0 MSKSTDEESIASPPPPPFPSSPCRPVIIRSVWAENLVSEFLVIRKVVEKYPLISMDTEFPGVVIRAQGVEQSHRSQDPTGRYEILKANVDALKLIQVGLT LADKEGNLPDLGTGNCYIWEFNFRDFDVSCDYHAHDSVDLLRRQGMDFEKNRKEGVEGVKFAELMMSSGLVLDPSVSWVTFHSAYDFGYLVKCLTQKPLP DGLTEFLDLVRMFFGDNVYDIKHLMKFGANLFGGLDRTCKTLGVERVTGKSHQAGSDSLATLHAFQKMREKYFNGREDGAIEKYANVLYGLELPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	3.2	0.8328
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	3.5	0.8336
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	3.9	0.8235
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	5.9	0.8083
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	6.0	0.8214
AT1G26800			RING/U-box superfamily protein...		Lus10036757 [exp]	6.0	0.8063
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	9.5	0.8022
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	17.3	0.7609
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	19.1	0.7256
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	19.6	0.7930

Compare expression of checked genes

Lus10021304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.