Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06270 111 / 1e-32 unknown protein AT3G11600 89 / 9e-24 unknown protein AT5G22270 56 / 2e-11 BIN4 ? unknown protein AT3G52561 49 / 2e-08 unknown protein AT1G16500 42 / 2e-05 unknown protein AT1G79160 38 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016982 [exp] 184 / 2e-61 AT5G06270 122 / 4e-37 unknown protein Lus10004209 [exp] 108 / 3e-31 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 108 / 3e-31 AT5G06270 100 / 4e-28 unknown protein Lus10043404 [exp] 67 / 3e-15 AT3G11600 78 / 1e-19 unknown protein Lus10034181 [exp] 64 / 4e-14 AT3G11600 87 / 3e-23 unknown protein Lus10002577 [exp] 44 / 3e-06 AT2G33510 99 / 1e-26 unknown protein Lus10001804 [exp] 43 / 1e-05 AT2G33510 145 / 8e-44 unknown protein Lus10031179 [exp] 38 / 0.0008 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 38 / 0.001 AT1G79160 201 / 1e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073400 [exp] 117 / 4e-35 AT5G06270 115 / 2e-34 unknown protein Potri.006G206000 [exp] 114 / 4e-34 AT5G06270 108 / 8e-32 unknown protein Potri.009G161400 [exp] 85 / 2e-22 AT5G06270 91 / 9e-25 unknown protein Potri.004G200300 [exp] 68 / 1e-15 AT5G06270 71 / 7e-17 unknown protein Potri.010G241400 [exp] 54 / 7e-10 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 44 / 8e-06 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 39 / 0.0002 AT1G79160 164 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021305 pacid=23178178 polypeptide=Lus10021305 locus=Lus10021305.g ID=Lus10021305.BGIv1.0 annot-version=v1.0 ATGAGCAGAAGGAACAACAGCAACAACCCGAAGCTGGAGCTGAAGCTAAACCTGTCGCCACCCAGAGGCGGGAACAACAACAACAACAACAACTTCATGA GGGTAGATTCGCCTAGCCGATCGGCCACGGTGTCCCCGACTTCGCCGCCGAGCTCCTGCGTGTCGTCTGAGATGAACCAAGATGATAGCAGCGGCGGGTT GAGGTACTCCAACAGCCCTGAAGCAACTTCCATGGTGCTTGTCGGTTGTCCGAGGTGCCTTATGTACGTGATGCTCTCTGAGGATGATCCCAGATGCCCC AAGTGCAAGAGCACCGTCTTGCTTGACTTCCTCCATGACAGCAGCAACAACAACTGCAACATGAGAGCTAAGAAGTGA
AA sequence Show only first row Show all	>Lus10021305 pacid=23178178 polypeptide=Lus10021305 locus=Lus10021305.g ID=Lus10021305.BGIv1.0 annot-version=v1.0 MSRRNNSNNPKLELKLNLSPPRGGNNNNNNNFMRVDSPSRSATVSPTSPPSSCVSSEMNQDDSSGGLRYSNSPEATSMVLVGCPRCLMYVMLSEDDPRCP KCKSTVLLDFLHDSSNNNCNMRAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06270			unknown protein		Lus10021305 [exp]	0	1
AT5G06270			unknown protein		Lus10016982 [exp]	1.0	0.8586
AT1G12330			unknown protein		Lus10004335 [exp]	4.2	0.7756
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	4.5	0.8227
AT5G54980			Uncharacterised protein family...		Lus10021788 [exp]	7.3	0.7027
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	9.5	0.7594
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10002089 [exp]	10.2	0.7748
AT5G10310			unknown protein		Lus10035922 [exp]	13.3	0.7338
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	16.7	0.6652
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	18.2	0.7347
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	24.6	0.6667

Compare expression of checked genes

Lus10021305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.