Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06260 574 / 0 TLD-domain containing nucleolar protein (.1) AT4G34070 310 / 7e-104 Calcium-binding EF-hand family protein (.1) AT2G45380 117 / 1e-28 unknown protein AT4G39870 64 / 6e-11 TLD-domain containing nucleolar protein (.1.2) AT2G05590 61 / 4e-10 TLD-domain containing nucleolar protein (.1.2) AT2G44850 59 / 3e-09 unknown protein AT4G17615 53 / 9e-08 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016984 [exp] 652 / 0 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1) Lus10014476 [exp] 71 / 3e-13 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2) Lus10041697 [exp] 68 / 4e-12 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2) Lus10024053 [exp] 67 / 2e-11 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10023727 [exp] 62 / 3e-10 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10011028 [exp] 52 / 1e-07 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206200 [exp] 664 / 0 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1) Potri.005G075800 [exp] 76 / 7e-15 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2) Potri.007G092700 [exp] 72 / 1e-13 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2) Potri.010G065900 [exp] 67 / 3e-12 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2) Potri.001G150200 [exp] 52 / 1e-07 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.003G084200 [exp] 50 / 9e-07 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07534 [flax] [poplar] TLD TLD
Representative CDS sequence Show only first row Show all	>Lus10021306 pacid=23178263 polypeptide=Lus10021306 locus=Lus10021306.g ID=Lus10021306.BGIv1.0 annot-version=v1.0 ATGGGCAACTCTCAATCAGCTTCGGCTTCTGATCCTCGGTACACTTCAGCCACCAGAGCTTTTTCCTCTAGTGAATTGGACGACCTCAAATCGTTGTTCG CTTCTCTGGCAGCGAAATCTGGAAGCAACGGGGATCATATCTCCCTTACTGTTTTCCAGGAATATTTCGGGTTGAAGGGTTCTCTAGGTCAGAGACTGTT TGATTTGATTTCCCAGCAACGGAAAGATGGCAGAATTAAGTTTGAAGACCTTGTTATTGCCAAGAGTGTTTACGAGAAGGGGAGCAAAGATGAAATTGAA GAGTTTATCTATCAGTTACTTGATGTCAATGGAGATGCTACTGTGGACAGGGCTGATCTAGAATCTGTTCTGGTTGCGGTTCTGGCGAATATCTTTGGTA CAGAAGCTTCTGAGACTGTCAATGTCTTTCTTGATGCTGCAACTTTCTCAAAGGGTAGTAACGGGCCTGCTGAAAAGGGCATGTCCCTTAACGATTTTCG AAGTTGGTCTGCTCTTGTTCCGTCGGCCAGGAAGTTCCTGGGGAGCTTACTGATACCACCTGATGCAGGAAGACTCGGTTCGCACGTTCCTCGATTGGTT CACGGAGAAGAAGTTAATTCGAATATGATCCTATTGAGGAAAGAATATGCTTGGCACATAGGAGGAGCGCTTCCGCAGCACGAGCTGGAAGAGTGGAAAC TCCTGTACCATAGCGCGGTGAATGGTTCTAGTTACAACACATTCGTGAGCAGCATTTCGAGCGGCGAGGGACCAACTGTGCTAGTTATTAAGGATAAAGA TGGGTACATCTATGGAGGATATGCATCTCAACCATGGGAGAGGCACGGCGACTTCTATGGGGATATGAAGTCATTCCTCTTTCAGCTTCATCCCAAGGCC TCGCTTTTCAAACCGACTGGAGCTAACACTAATGTTCAATGGTGTGCAGTGAACTTTAGCTCAGAGAGCATACCAAATGGGATTGGTTTCGGAGGACGAG TGAATCACTTTGGTTTGTTCTTATCAGCAAGCTTCGATTCAGGGCATACCTTCAACTGCACCACATTCGGCAGCCCTTGCCTTTCGAAGAACAGCAGGAT AATCCCAGAAGTCATAGAATGCTGGGGTGTTGTTCAGGGTCGAGGAGAGCAGGAAAAGAACGATGGACCTAGGGGCACCGTGCTTGAGAGGTTTAAAGAG GATCGACACATGCTTAACATGGTCGGTATTGCAAATTCAAGCAACTGA
AA sequence Show only first row Show all	>Lus10021306 pacid=23178263 polypeptide=Lus10021306 locus=Lus10021306.g ID=Lus10021306.BGIv1.0 annot-version=v1.0 MGNSQSASASDPRYTSATRAFSSSELDDLKSLFASLAAKSGSNGDHISLTVFQEYFGLKGSLGQRLFDLISQQRKDGRIKFEDLVIAKSVYEKGSKDEIE EFIYQLLDVNGDATVDRADLESVLVAVLANIFGTEASETVNVFLDAATFSKGSNGPAEKGMSLNDFRSWSALVPSARKFLGSLLIPPDAGRLGSHVPRLV HGEEVNSNMILLRKEYAWHIGGALPQHELEEWKLLYHSAVNGSSYNTFVSSISSGEGPTVLVIKDKDGYIYGGYASQPWERHGDFYGDMKSFLFQLHPKA SLFKPTGANTNVQWCAVNFSSESIPNGIGFGGRVNHFGLFLSASFDSGHTFNCTTFGSPCLSKNSRIIPEVIECWGVVQGRGEQEKNDGPRGTVLERFKE DRHMLNMVGIANSSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06260			TLD-domain containing nucleola...		Lus10021306 [exp]	0	1
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	2.0	0.7856
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	11.5	0.7439
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	13.7	0.7971
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	22.4	0.7195
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	29.4	0.7358
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	44.0	0.7054
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	53.7	0.7136
AT3G28430			unknown protein		Lus10018448 [exp]	60.8	0.6805
AT2G47960			unknown protein		Lus10018483 [exp]	62.1	0.7265
AT3G60480			unknown protein		Lus10000560 [exp]	64.5	0.7160

Compare expression of checked genes

Lus10021306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.