Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04800 226 / 1e-77 Ribosomal S17 family protein (.1.2.3.4) AT2G04390 224 / 6e-77 Ribosomal S17 family protein (.1) AT2G05220 223 / 1e-76 Ribosomal S17 family protein (.1.2) AT3G10610 218 / 2e-74 Ribosomal S17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004208 [exp] 243 / 4e-84 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10029412 [exp] 243 / 4e-84 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10041076 [exp] 224 / 1e-76 AT5G04800 226 / 8e-78 Ribosomal S17 family protein (.1.2.3.4) Lus10030344 [exp] 227 / 2e-72 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10016985 [exp] 158 / 3e-51 AT3G10610 143 / 1e-45 Ribosomal S17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G017300 [exp] 228 / 2e-78 AT5G04800 229 / 1e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.010G241200 [exp] 228 / 3e-78 AT5G04800 228 / 2e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.016G073750 [exp] 174 / 3e-57 AT5G04800 171 / 5e-56 Ribosomal S17 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00833 [flax] [poplar] Ribosomal_S17e Ribosomal S17
Representative CDS sequence Show only first row Show all	>Lus10021307 pacid=23178309 polypeptide=Lus10021307 locus=Lus10021307.g ID=Lus10021307.BGIv1.0 annot-version=v1.0 ATGGGTCGCGTTCGTACCAAGACCGTGAAGAAATCCTCCCGCCAGGTCATCGAGCGTTACTACTCGAAGATGACTCTCGATTTCCACACCAACAAGAAGA TCCTTGAGGAAGTGGCAATCATCCCTTCCAAGCGCCTCCGCAACAAGATCGCCGGATTCTCCACTCACCTGATGAAGCGTATCCAGAAGGGTCCAGTCCG TGGAATCTCCCTCAAGCTTCAGGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTCCCCGAGGAGTCCGCCATCAGGACTGACAAGATCGAGGTCGACAAG GAGACTATCGAGATGCTTACTGCACTGGGGATGGCCGACTGTCCTGGAATCGTTGAGGTCGATCCTATTGCCGTCAGCGTTCCGCAGTTCGGCTTTGGAA GGGGTGCTGGTCGTGGGAGGTACTGA
AA sequence Show only first row Show all	>Lus10021307 pacid=23178309 polypeptide=Lus10021307 locus=Lus10021307.g ID=Lus10021307.BGIv1.0 annot-version=v1.0 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEESAIRTDKIEVDK ETIEMLTALGMADCPGIVEVDPIAVSVPQFGFGRGAGRGRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04800			Ribosomal S17 family protein (...		Lus10021307 [exp]	0	1
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	1.0	0.9109
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	3.2	0.8738
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	4.0	0.8538
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10038910 [exp]	5.5	0.8433
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	5.5	0.8597
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	6.7	0.8501
AT1G73940			unknown protein		Lus10017355 [exp]	12.6	0.8208
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	16.7	0.8174
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	22.2	0.8027
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	22.4	0.7893

Compare expression of checked genes

Lus10021307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.