Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15040 91 / 2e-22 Protein of unknown function, DUF584 (.1) AT4G04630 73 / 3e-16 Protein of unknown function, DUF584 (.1) AT4G21970 71 / 2e-15 Protein of unknown function, DUF584 (.1) AT3G45210 63 / 1e-12 Protein of unknown function, DUF584 (.1) AT4G21930 63 / 3e-12 Protein of unknown function, DUF584 (.1) AT1G29640 62 / 3e-12 Protein of unknown function, DUF584 (.1) AT1G11700 62 / 5e-12 Protein of unknown function, DUF584 (.1) AT4G26950 61 / 6e-12 Protein of unknown function, DUF584 (.1.2) AT5G60680 61 / 1e-11 Protein of unknown function, DUF584 (.1) AT1G61930 56 / 2e-09 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016988 [exp] 288 / 7e-100 AT3G15040 87 / 8e-21 Protein of unknown function, DUF584 (.1) Lus10004207 [exp] 163 / 1e-50 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10029411 [exp] 160 / 2e-49 AT3G15040 112 / 3e-30 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 84 / 9e-20 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 72 / 1e-15 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 69 / 1e-15 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 69 / 3e-14 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 68 / 4e-14 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 67 / 1e-13 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076300 [exp] 142 / 3e-42 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 91 / 3e-22 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 78 / 9e-18 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 67 / 1e-13 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 65 / 9e-13 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 63 / 2e-12 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 62 / 4e-12 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 62 / 6e-12 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 59 / 8e-11 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 58 / 2e-10 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10021309 pacid=23178305 polypeptide=Lus10021309 locus=Lus10021309.g ID=Lus10021309.BGIv1.0 annot-version=v1.0 ATGGACTCCGGCCGCCGATTTCTCTGCTCGACCTCTCCGTCGAGAGACGGGGAAGCAGCAGCAGGGATCGGTCACGAGCTGAACGAGGACGAGATTCTCT GGACCGACGACGATTTCAACACAGGTCAACATCATCATCTTCCTCCTCCGCCGAAGCAACAGCGCCACAGACGCAGCGTGTCTTTCCACCACTCAAACTC CGGGATCCTAGCTGCGCTGCCGGAGATCAACCGCCGCCTGCCCGTGCTTTCCCGCAAGCCGTCTATCTCCTCGACGGTAAAGGCCCTTCCAAGGACTGTC CCAAGCGAGCGAGACAACAAGTCCACTCAGTCGATGCCGGCGGTTAGGGGATTGAGGCAGCAATCTGCTCCTATTAAAGTGCCGATGATGTCGATCGCCA TGGCTAAGCAGAAGAACAGCAGGTACAAGGACGATTACGAGTACTGCAGCGGAGGTGGTGGAGATGAGGAGATGATGATGCTGCCGCCTCACGAGATCGT GGCCAGAGGTTGCAGGCAGTCGTCGGGTTCAATGCTTGAAGGAGTTGGACGAACACTCAAGGGAAGGGATCTCAGGCAGGTCAGAAACGCCGTGTTCCGC CAAACAGGCTTTCTCGATTGA
AA sequence Show only first row Show all	>Lus10021309 pacid=23178305 polypeptide=Lus10021309 locus=Lus10021309.g ID=Lus10021309.BGIv1.0 annot-version=v1.0 MDSGRRFLCSTSPSRDGEAAAGIGHELNEDEILWTDDDFNTGQHHHLPPPPKQQRHRRSVSFHHSNSGILAALPEINRRLPVLSRKPSISSTVKALPRTV PSERDNKSTQSMPAVRGLRQQSAPIKVPMMSIAMAKQKNSRYKDDYEYCSGGGGDEEMMMLPPHEIVARGCRQSSGSMLEGVGRTLKGRDLRQVRNAVFR QTGFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15040			Protein of unknown function, D...		Lus10021309 [exp]	0	1
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	1.0	0.9287
AT2G39870			unknown protein		Lus10040247 [exp]	5.1	0.9055
AT2G25270			unknown protein		Lus10001945 [exp]	7.1	0.8998
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	8.8	0.8895
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	11.1	0.8939
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	12.0	0.8933
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	12.3	0.8878
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	14.1	0.8812
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	15.3	0.8912
AT2G39870			unknown protein		Lus10004675 [exp]	17.1	0.8700

Compare expression of checked genes

Lus10021309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.