Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26510 730 / 0 UKL4 uridine kinase-like 4 (.1.2) AT1G55810 728 / 0 UKL3 uridine kinase-like 3 (.1.2.3) AT5G40870 639 / 0 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT3G27190 635 / 0 UKL2 uridine kinase-like 2 (.1) AT3G27440 605 / 0 UKL5 uridine kinase-like 5 (.1) AT1G26190 85 / 2e-17 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 81 / 3e-16 Phosphoribulokinase / Uridine kinase family (.1) AT1G32060 77 / 3e-15 PRK phosphoribulokinase (.1) AT3G53900 68 / 1e-12 UPP, PYRR PYRIMIDINE R, uracil phosphoribosyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016989 [exp] 886 / 0 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10041569 [exp] 639 / 0 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 634 / 0 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10032051 [exp] 523 / 0 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10022289 [exp] 510 / 1e-180 AT3G27440 625 / 0.0 uridine kinase-like 5 (.1) Lus10000674 [exp] 83 / 7e-17 AT1G32060 667 / 0.0 phosphoribulokinase (.1) Lus10011060 [exp] 81 / 2e-16 AT1G32060 624 / 0.0 phosphoribulokinase (.1) Lus10030919 [exp] 81 / 9e-16 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030570 [exp] 80 / 1e-15 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165100 [exp] 777 / 0 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G467800 [exp] 773 / 0 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.017G069600 [exp] 656 / 0 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 646 / 0 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 602 / 0 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.008G110500 [exp] 79 / 3e-15 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.010G134400 [exp] 77 / 6e-15 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.003G099400 [exp] 76 / 1e-14 AT1G32060 690 / 0.0 phosphoribulokinase (.1) Potri.001G134000 [exp] 76 / 1e-14 AT1G32060 699 / 0.0 phosphoribulokinase (.1) Potri.015G055400 [exp] 76 / 2e-14 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10021310 pacid=23178193 polypeptide=Lus10021310 locus=Lus10021310.g ID=Lus10021310.BGIv1.0 annot-version=v1.0 ATGGGATCAAAATCAGTGGTGGATGTGATAGAGGCATCCTCAGGTGTGCATTTTTCTGGCTTTCGCATGGACGGCTCAGCCTCGGGGCCTAGAACTAATG GACATCCAACCACCTCTGCCAGTGATGATATTTACAAACAACCTTTTGTTATTGGAGTTGCTGGAGGAGCAGCTTCTGGGAAAACTACAGTGTGTGACAT GATCATCCAGCAGCTTCACGATCAGCGTGTAGTTCTTGTTAATCAGGACTCCTTTTATTTCAATCTTTCTGAAGAAGAACTTAAGCGGGTCCATGAATAC AACTTTGACCATCCTGATGCATTTGACAACGATCAGCTGTTATCTGTCATGGAGAAGCTGAGGCGTGGGCAGGCTGTGGATATTCCTAAGTATGATTTCA AGAGTTACAAAAGTGACGCTATCCCTGCAAGAAGGGTTAATCCGTCAGATGTCATAATTTTGGAAGGAATTCTTATTCTTCATGATCCTCGCATTCGGGA CTTGATGAACATGAAGATATTTGTTGATATAGATGCTGATGTACGGTTGGCAAGGAGAATAAGGCGTGATACTGGCGAGAAAGGTAGAGATATTGCCACC GTTCTTGATCAGTACTCAAAATTTGTGAAGCCTGCTTTTGATGACTTCATACTCCCAACCAAAAAGTATGCTGATATTATCATTCCCCGTGGAGGAGACA ATCATGTTGCAATTGATTTGATTGTGCAGCATATTCGTACCAAACTTGGTCAACATGATCTGTGTAAAATTTACCCCAACTTATACGTCATTCAATCAAC TTTTCAGGTGGTAGAGCACGGTCTTGGACACCTACCATTTACAGAGAAGCAGGTTCTTACGCCAACTGGTTCTGTTTATACTGGTGTGGATTTCTGCAAG AGATTGTGCGGTGTGTCCGTTGTGAGGAGTGGTGAGAGTATGGAAAATGCATTGCGTGCTTGTTGCAAAGGCATCAAAATAGGGAAGATCCTTATCCATA GGGAAGGTGACAATGGTCAGCATCTAATCTACGAGAAGTTACCAAAAGACATTGCAGATAGGCATGTTTTACTACTGGATCCCATTTTAGGAACAGGCAA TTCGGCAGTTCAAGCCATTTCTTTACTCGTCAGCAAGGGGGTGCCTGAGGCCAACATTATATTTCTTAATCTCATATCAGCACCTCAGGGAGTTCATGTA GTCTGCAAAAGATTCCCCAGGATAAAGATTGTTACATCAGAGATTGAAACAGGTTTGAATGAAGATTTCCGTGTCATACCGGGGATGGGGGAGTTTGGAG ACAGATATTTCGGCACAGACGACGATGACCAGCCGGTGGTGTCGGGGGCGGGCGACACAGTTGTCGGTGGCTGCAGCCACAAAGACCGGTAG
AA sequence Show only first row Show all	>Lus10021310 pacid=23178193 polypeptide=Lus10021310 locus=Lus10021310.g ID=Lus10021310.BGIv1.0 annot-version=v1.0 MGSKSVVDVIEASSGVHFSGFRMDGSASGPRTNGHPTTSASDDIYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYFNLSEEELKRVHEY NFDHPDAFDNDQLLSVMEKLRRGQAVDIPKYDFKSYKSDAIPARRVNPSDVIILEGILILHDPRIRDLMNMKIFVDIDADVRLARRIRRDTGEKGRDIAT VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQVVEHGLGHLPFTEKQVLTPTGSVYTGVDFCK RLCGVSVVRSGESMENALRACCKGIKIGKILIHREGDNGQHLIYEKLPKDIADRHVLLLDPILGTGNSAVQAISLLVSKGVPEANIIFLNLISAPQGVHV VCKRFPRIKIVTSEIETGLNEDFRVIPGMGEFGDRYFGTDDDDQPVVSGAGDTVVGGCSHKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	2.0	0.8329
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	4.6	0.8017
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	5.3	0.7849
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	8.0	0.8078
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	9.5	0.7576
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	10.4	0.7201
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	13.8	0.7715
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	16.7	0.7510
AT5G38700			unknown protein		Lus10025041 [exp]	19.6	0.7061
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	24.8	0.7261

Compare expression of checked genes

Lus10021310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.