Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52570 395 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) AT3G11510 230 / 5e-74 Ribosomal protein S11 family protein (.1) AT3G52580 227 / 9e-73 Ribosomal protein S11 family protein (.1) AT2G36160 227 / 1e-72 Ribosomal protein S11 family protein (.1) AT4G10030 167 / 8e-47 alpha/beta-Hydrolases superfamily protein (.1) AT4G10050 58 / 5e-09 esterase/lipase/thioesterase family protein (.1) ATCG00750 52 / 6e-08 ATCG00750.1, RPS11 ribosomal protein S11 (.1) AT1G68890 50 / 3e-06 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016992 [exp] 852 / 0 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10014220 [exp] 441 / 4e-153 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1) Lus10022691 [exp] 276 / 5e-91 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10022693 [exp] 234 / 6e-74 AT3G11510 261 / 2e-89 Ribosomal protein S11 family protein (.1) Lus10022689 [exp] 219 / 4e-69 AT3G52570 182 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1) Lus10041047 [exp] 160 / 2e-44 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10014222 [exp] 115 / 3e-31 AT3G52570 130 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) Lus10006176 [exp] 69 / 3e-12 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10030915 [exp] 45 / 0.0001 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076550 [exp] 326 / 5e-110 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G218700 [exp] 234 / 2e-75 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.009G019400 [exp] 234 / 2e-75 AT3G52580 241 / 4e-83 Ribosomal protein S11 family protein (.1) Potri.011G080500 [exp] 234 / 3e-75 AT3G52580 238 / 4e-82 Ribosomal protein S11 family protein (.1) Potri.004G131800 [exp] 231 / 4e-74 AT3G52580 235 / 7e-81 Ribosomal protein S11 family protein (.1) Potri.016G077066 [exp] 191 / 2e-58 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G076601 [exp] 156 / 4e-46 AT3G52570 181 / 1e-57 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G074600 [exp] 164 / 1e-45 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G099900 [exp] 52 / 4e-07 AT4G10050 549 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.019G072900 [exp] 50 / 2e-06 AT4G10050 555 / 0.0 esterase/lipase/thioesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00411 [flax] [poplar] Ribosomal_S11 Ribosomal protein S11 CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10021315 pacid=23178313 polypeptide=Lus10021315 locus=Lus10021315.g ID=Lus10021315.BGIv1.0 annot-version=v1.0 ATGCTCGCTCTTGAAAACAAAACGCCTGTTCAGTCACTGCTTCCCGCCGTCGCTATGGCATTTCGCAAGAACAATTCGGTCGGTCTGAGGTTCTTGGCAC GGTTCCTCACTGCGCCGGACCGAGGCTTCCGCTACACGAACCCGCGGAATCTTCAGACCTTAGCTTTCGAAGAGGTCCGATCGTCTTCCACAGACAAGCC CCACACGTCGACGGCTTTCGTCCTCCATGGACTCTTGGGATCCGGACGCAACTGGCGTTCCTTCTCCCGGACTCTTGCTTCTTTCCTCTCCAATTCCTCT CCTTCTTCTGAGTGGAGGATGGTGGTTGTTGACCTAAGGAACCATGGCAAGTCTGCGGAGGTTGAAGGTCTGGAGCCGCCTCATGACATGTTCAACGCGG CCAACGATTTGGCGAATTTGGTGAAAGCTCAAGGTTGGGATTGGCCTGACGTTGTTATGGGCCACTCCATGGGAGGTAAAGTTGCGCTGCAGTTTGCGGA GTTGTGGGTACTGGATTCTGTCCCTGGAGAGGTGAGTACAGATAACAGCGATGGAGAAGTAGAAAAGGTCTTAAAGACTTTGCAGAGTTTACCTTCATCG ATTCCGTCAAGAAGCTGGGTTGTAAACCACATGGTCGAGCTCGGCTTCTCAAAATCACTATCAGAATGGATAGCCACCAACATAAAGAAATCTGGAGAAC TCGAGACATGGGCATTCAATCTGGATGGAGCAATCCAAATGTTCAATTCATACAGGGATACATCATATTGGTCTCTGTTGGAACATCCCCCGAAAGGGAT GGAGATAGGACTCGTAGTTGCAGAGAACAGTGATCGTTGGGAGCCGGATGTGATCAGCCGACTGGAAACCCTTGCTGCAAAGAAGAAAGATGAGTCGGAG GGGTCGTTTTCGCTTCAGGTTCTTCCGCGCTCAGGGCACTGGGTTCATGTCGACAATCCAAAGGGACTGCTTGATATCGTGGCTCCTAAGATTGCTTCCA TCTCCGCCTCCCAGCTACCGAGCTCTTCACTATTTCCTAGAAGCATGTCGAAGCGAAAGGTTAAAGAGCCCAAGGAGGAGACTGTTACCTTGGGACCAAC TCTCAAGCCTGGAGAGAATAACTTTGGTGTCGCTCACATCTTCGCATCATTCAACGACACCTTCATCCACGTTACCGACATTTCTGGAAGAGAAACATTG GTTCGCATCACTGGTGGGATGAAGGTGAAAGCTGATAGGGATGAGTCTTCACCCTATGCTGCCATGCTTGCAGCACAGGATGTTACTGCTCGTTGCAAGG AGCTCGGCGTCACTGCACTTCACATTAAGCTCCGAGCAACCGGTGGAAACAAGACCAAGACACCTGGTCCTGGTGCTCAGTCTGCACTTAGGGCTCTGGC ACGTTCTGGGATGAAGATTGGCCGCATCGAGGATGTGACCCCTATTCCAACAGACAGCACTCGCAGAAAGGGTGGAAGGAGAGGAAGAAGGCTCTGA
AA sequence Show only first row Show all	>Lus10021315 pacid=23178313 polypeptide=Lus10021315 locus=Lus10021315.g ID=Lus10021315.BGIv1.0 annot-version=v1.0 MLALENKTPVQSLLPAVAMAFRKNNSVGLRFLARFLTAPDRGFRYTNPRNLQTLAFEEVRSSSTDKPHTSTAFVLHGLLGSGRNWRSFSRTLASFLSNSS PSSEWRMVVVDLRNHGKSAEVEGLEPPHDMFNAANDLANLVKAQGWDWPDVVMGHSMGGKVALQFAELWVLDSVPGEVSTDNSDGEVEKVLKTLQSLPSS IPSRSWVVNHMVELGFSKSLSEWIATNIKKSGELETWAFNLDGAIQMFNSYRDTSYWSLLEHPPKGMEIGLVVAENSDRWEPDVISRLETLAAKKKDESE GSFSLQVLPRSGHWVHVDNPKGLLDIVAPKIASISASQLPSSSLFPRSMSKRKVKEPKEETVTLGPTLKPGENNFGVAHIFASFNDTFIHVTDISGRETL VRITGGMKVKADRDESSPYAAMLAAQDVTARCKELGVTALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	1.0	0.9420
AT1G41880			Ribosomal protein L35Ae family...		Lus10040235 [exp]	1.4	0.9332
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	2.4	0.8988
AT4G18100			Ribosomal protein L32e (.1)		Lus10012195 [exp]	3.2	0.8853
AT2G19740			Ribosomal protein L31e family ...		Lus10042028 [exp]	3.9	0.9201
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	4.5	0.9024
AT1G55205			unknown protein		Lus10024700 [exp]	4.6	0.8580
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	5.3	0.9060
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	5.7	0.8361
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	6.0	0.8915

Compare expression of checked genes

Lus10021315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.