Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06130 310 / 3e-107 chaperone protein dnaJ-related (.1.2) AT5G61670 285 / 3e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016993 [exp] 384 / 5e-135 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2) Lus10022688 [exp] 334 / 3e-115 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2) Lus10014223 [exp] 290 / 5e-100 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2) Lus10016713 [exp] 289 / 2e-97 AT5G61670 447 / 2e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G210500 [exp] 332 / 1e-114 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2) Potri.012G114200 [exp] 286 / 2e-96 AT5G61670 380 / 3e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021316 pacid=23178197 polypeptide=Lus10021316 locus=Lus10021316.g ID=Lus10021316.BGIv1.0 annot-version=v1.0 ATGCAGACGCAGGACATCGAGGAGAATATCAGGAACAGGCGCAACAAGATCTTTCTTCTCATGGAGGAGTTGCGGAGATTGCGGATACAGCAGAGGATAA AAAGCGGGAAAAGAAGTATCAACGGAGCTGGTGAAGAAGAGGAGATGAGCAACGAGATGCCTGAAATTCCGTCCTCGATTCCCTTTCTTCCTCACGTGAC GCCAAAGACACTAAAGCAGCTCTACCTTACAAGCTTCTCATTCGTATCAGGGATCATTATGTTTGGGGGACTTATTGCTCCTACTCTGGAAGTGAAACTG GGTATAGGGGGAACCTCCTACGAGGATTTTATTAGGAGCATGCATTTGCCACTGCAGTTAAGCCAGGTCGATCCTATTGTAGCATCCTTTTCAGGTGGAG CAGTTGGTGTCATCTCAGCTTTAATGTTGATTGAAGTTAACAATGTAGAGCAACAAGAGAAAAAGAGGTGCAGATACTGCAATGGGACTGGATATTTGGC ATGTGCTCGATGCGCTGGTGGTGGTGTCTGCTCGAGTGTTAACCCTATCTCATCATCCAGTGTTTCAGATCAACCAATGCGTGTCCCCTCAACTCAAAGG TGTCTAAACTGCTCTGGTGCAGGAAAGTGTTACTTCTGCCTGTTTATGAACTTGTGGCAGCTTCTTTGCCTCCTCATTAACATCAATTTAGAAAGCCATG CAGCTACTTTAACCATCAGCAGAATGGTTTCTGAAACGCTTTTAACTGGTTATTTGTTTCAGGTGATGTGCCCTACATGTCTCTGCACCGGAATGGTGAT GGCAAGTGAACACGATCCCCGAATCGATCCATTCGATTGA
AA sequence Show only first row Show all	>Lus10021316 pacid=23178197 polypeptide=Lus10021316 locus=Lus10021316.g ID=Lus10021316.BGIv1.0 annot-version=v1.0 MQTQDIEENIRNRRNKIFLLMEELRRLRIQQRIKSGKRSINGAGEEEEMSNEMPEIPSSIPFLPHVTPKTLKQLYLTSFSFVSGIIMFGGLIAPTLEVKL GIGGTSYEDFIRSMHLPLQLSQVDPIVASFSGGAVGVISALMLIEVNNVEQQEKKRCRYCNGTGYLACARCAGGGVCSSVNPISSSSVSDQPMRVPSTQR CLNCSGAGKCYFCLFMNLWQLLCLLININLESHAATLTISRMVSETLLTGYLFQVMCPTCLCTGMVMASEHDPRIDPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06130			chaperone protein dnaJ-related...		Lus10021316 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	6.7	0.9524
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	9.0	0.9386
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	9.3	0.9481
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	16.7	0.9261
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	17.5	0.9412
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	17.6	0.9434
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	19.2	0.9427
					Lus10008051 [exp]	19.7	0.9357
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	20.9	0.9431
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	23.5	0.9394

Compare expression of checked genes

Lus10021316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.