Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06140 498 / 4e-177 ATSNX1 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) AT5G07120 81 / 3e-16 SNX2b sorting nexin 2B (.1) AT5G58440 77 / 5e-15 SNX2a sorting nexin 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016994 [exp] 598 / 0 AT5G06140 650 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10014225 [exp] 535 / 0 AT5G06140 645 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Lus10026403 [exp] 77 / 3e-15 AT5G07120 753 / 0.0 sorting nexin 2B (.1) Lus10042247 [exp] 77 / 3e-15 AT5G07120 811 / 0.0 sorting nexin 2B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076400 [exp] 542 / 0 AT5G06140 664 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.006G209600 [exp] 523 / 0 AT5G06140 635 / 0.0 ARABIDOPSIS THALIANA SORTING NEXIN 1, sorting nexin 1 (.1) Potri.019G124200 [exp] 76 / 7e-15 AT5G07120 778 / 0.0 sorting nexin 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain CL0145 [flax] [poplar] Golgi-transport PF09325 [flax] [poplar] Vps5 Vps5 C terminal like
Representative CDS sequence Show only first row Show all	>Lus10021317 pacid=23178156 polypeptide=Lus10021317 locus=Lus10021317.g ID=Lus10021317.BGIv1.0 annot-version=v1.0 ATGATGAACTCTTCAAATTACGAATCTGCCATTGCCCCACCTCTGTTCTCTCCGACGAATGTACCTGGCTACCAAGGACCTGAAAAAATTGTCATTCGGC GTTATAGTGATTTTGTGTGGTTACATGATCGGCTTTTCGAGAAGTACAAAGGAGTGTTCGTTCCTCCTCTACCAGAGAAGAGCGCTGTTGAAAAGTTCCG TTTCAGTGCGGAATTTATTGAGATGAGGCGTCAAGCATTGGATATATTTGTTAATAGGATAGCCTCACATCAGGAACTTCAGCCAAGTGAGGATCTGAGA ACCTTTTTGCAGGCAGATGAAGAGGACGTGCAGTCTAAGATGAGTGATGTTGTTCTTGGGAAAGAAAAACCTGTTGAAGAATCAAATCCCGAATATGAAA AGTTGAAGCATTACATCTTTGAGCTTGAAAACCACTTAGCAGAGGCTCAAAAACATGCATATCGTCTTGTAAAGAGGCACAGAGGTAATCTTGCCATCTT GGCAGAGGCATTTGTGACATCATACTCGATTTGGAGGATTGCAGTTCCCTCAAAACTAGGACAGTCTCTTTCAGATTTCGGTAAGGCAGCTAAGCTACTT GGTGCATGCGAAGTAGATGCCCTTGGAAAAGCGTTTACTGAGCTGGGGGCAAAATCAGAGGCATTGTCAGTCCGGCTACAGAAAGAGGCCAATCAACTCC TAATGAATTTTGAAGAACCTATGAAAGATTATGTCCGTGCGGTGCAGTCCATTAAGGCTACTATTGCTGAAAGAGCAAATGCGTTCAGGCAACAATGTGA ATTGGCTGAAACGATGAAGTTGAAGGAGCTAAATCTGAACAAGCTTATGCTAATGCGCTCTGACAGAGTAGGTGAAGCTGAAATCGAATACAAAGAGTTG GAAGCAGACAGCCAGGAGGCTGCAAGAACATTTGAGAACATAGTCCGACTAATGAACGGAGAGATTGTACGTTTCCAAGAACAGAAAACAATCGACATGG GAAAAGCATTCCATGAATTCGCAAAGGGACAGGCACGCCTGGCTAATAGTATTGCAGATGCTTGGCGAAGCCTCCTCCCTAAACTCGAAGCTTGTTCCGC CACTTCCGTGTAG
AA sequence Show only first row Show all	>Lus10021317 pacid=23178156 polypeptide=Lus10021317 locus=Lus10021317.g ID=Lus10021317.BGIv1.0 annot-version=v1.0 MMNSSNYESAIAPPLFSPTNVPGYQGPEKIVIRRYSDFVWLHDRLFEKYKGVFVPPLPEKSAVEKFRFSAEFIEMRRQALDIFVNRIASHQELQPSEDLR TFLQADEEDVQSKMSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRGNLAILAEAFVTSYSIWRIAVPSKLGQSLSDFGKAAKLL GACEVDALGKAFTELGAKSEALSVRLQKEANQLLMNFEEPMKDYVRAVQSIKATIAERANAFRQQCELAETMKLKELNLNKLMLMRSDRVGEAEIEYKEL EADSQEAARTFENIVRLMNGEIVRFQEQKTIDMGKAFHEFAKGQARLANSIADAWRSLLPKLEACSATSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10021317 [exp]	0	1
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	3.7	0.7900
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	6.8	0.7886
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	10.6	0.7816
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	13.1	0.7853
AT1G12530			unknown protein		Lus10007047 [exp]	13.4	0.7674
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	15.8	0.7754
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	19.9	0.7555
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	24.2	0.7719
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	25.0	0.7453
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	28.8	0.7539

Compare expression of checked genes

Lus10021317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.