Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 561 / 0 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 397 / 2e-135 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51760 391 / 3e-133 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT1G44350 388 / 1e-131 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT5G54140 382 / 1e-129 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G51780 380 / 5e-129 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 373 / 3e-126 ILL1 IAA-leucine resistant (ILR)-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016998 [exp] 887 / 0 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10022761 [exp] 489 / 6e-172 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 438 / 1e-151 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 436 / 9e-151 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 421 / 2e-144 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 412 / 3e-141 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 410 / 1e-140 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10029200 [exp] 403 / 1e-137 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 395 / 2e-134 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207400 [exp] 679 / 0 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 661 / 0 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 546 / 0 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 432 / 6e-149 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 426 / 2e-146 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 426 / 6e-146 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.012G007400 [exp] 410 / 9e-141 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G045200 [exp] 410 / 2e-140 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 399 / 4e-136 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10021321 pacid=23178219 polypeptide=Lus10021321 locus=Lus10021321.g ID=Lus10021321.BGIv1.0 annot-version=v1.0 ATGGAGTTCATCATCTACCGACTCACCAGTAGTTTCTTCTGCTTCCTAATAACACTTCTAGTGGTGGGTGGTCAATCTTCCGTCACCGGTCAACAACACC ACCTGCAGGGGTTGGAGACCCTAGCTAGGGAGCTAATGGAATCTGCAAAGGAACCGGAGTTCTTCGAGTGGATGAGAGGAATCAGAAGGAGGATTCATCA GTATCCCGAACTGGGTTTTGAGGAGCACAGAACCAGCCAGATCATCAGAGCCGCGCTTGATTCACTTGGGATTCATTACAAATGGCCTGTTGCCCAAACT GGCGTGGTTGCTTCCATTGGAAATGGAGGCAATCCAGTTTTCGGCCTTAGAGCCGATATGGATGCCCTTCCTCTTCAGGAAAAAGTAGAGTGGGAGTACA AGAGCAAAATTGAGGGAAAGATGCATGCTTGCGGCCATGATTCTCATGTAGCAATGCTCCTTGGAGCTGCCAAGTTACTCCATGCCAAGAGAGACACACT TAAGGGAACGGTGAAGCTAGTTTTCCAGCCAGGAGAGGAGGGTTACGCTGGTGCTTACCATATGTTACAAGACGGCTGTCTTGATGATCTGAATGCCATC TTAAGCATACATGTTTTGCCTTCAGTGCCTACTGGCGCCATTGCTTCCAGACCTGGTCCCATACTTGCTGGCGTTGGGCTCTTCTCTGCAACAATTCAGG GAGTTGGCGTCCATGCTTCATCTCCTCATTTGGGTAGAGACCCAATTCTAGCGGCATCAGCTTCAATCGTTGCTCTCCAACAGATTGTATCTCGCGAGAC CGATCCCCTTGAGGCTGCGGTGGTGACAGTAGGATTGATTGAAGGAGGCAAAGCAGGAAATGTAATTCCAGATACAGTGCGGTTTGAAGGAACTTTCAGA AGTCTAAGCACAAAGGGTGTATATTACCTTCAACAGAGAATTAAAGAGATCATTGAAATGCAGGCAGCAGTTCATAGGTGCAATGTAACGATGGACTTCA TGGAGCACAGACATCTCCCGCACCCTCCCATGATAAACGATGAAATGGTATATAACCATGTTAAGAAGGTTGGAGAGATCTTACTTGGTGAGTCGAATGT GCAGACCTTTCCAGTCACCATGGGTGCAGAGGACTTCAGTTTCTTCTCGGAAAGGATGCCTGCTGCGATTTTTGTAATCGGAGTAAAGAACGAGACTCTG AACTCGGATCAACCGCTTCACTCGCCTTACTTCTTCATTGACGAGGAGTCGTTTCCGGTAGGTGCAGCTCTTAATGCTGCTGCTGCAATCTCATACTTGG ACAGCCACCACGCCATTGTTGAGTGCGACCAACCAGATTTGCTTTCAGCTTTTGAAACGAAAATCATTTAA
AA sequence Show only first row Show all	>Lus10021321 pacid=23178219 polypeptide=Lus10021321 locus=Lus10021321.g ID=Lus10021321.BGIv1.0 annot-version=v1.0 MEFIIYRLTSSFFCFLITLLVVGGQSSVTGQQHHLQGLETLARELMESAKEPEFFEWMRGIRRRIHQYPELGFEEHRTSQIIRAALDSLGIHYKWPVAQT GVVASIGNGGNPVFGLRADMDALPLQEKVEWEYKSKIEGKMHACGHDSHVAMLLGAAKLLHAKRDTLKGTVKLVFQPGEEGYAGAYHMLQDGCLDDLNAI LSIHVLPSVPTGAIASRPGPILAGVGLFSATIQGVGVHASSPHLGRDPILAASASIVALQQIVSRETDPLEAAVVTVGLIEGGKAGNVIPDTVRFEGTFR SLSTKGVYYLQQRIKEIIEMQAAVHRCNVTMDFMEHRHLPHPPMINDEMVYNHVKKVGEILLGESNVQTFPVTMGAEDFSFFSERMPAAIFVIGVKNETL NSDQPLHSPYFFIDEESFPVGAALNAAAAISYLDSHHAIVECDQPDLLSAFETKII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	0	1
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	2.2	0.9562
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	4.1	0.9309
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	4.5	0.9282
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	5.3	0.9507
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	7.1	0.9489
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003455 [exp]	7.5	0.9396
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	7.9	0.9378
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	9.4	0.9348
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	9.7	0.9453
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	10.4	0.9468

Compare expression of checked genes

Lus10021321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.