Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 264 / 9e-85 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 253 / 1e-80 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44310 250 / 2e-79 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44320 246 / 6e-78 AtNIT3, NIT3 nitrilase 3 (.1) AT2G27450 68 / 2e-12 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016999 [exp] 295 / 5e-99 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10005201 [exp] 280 / 8e-91 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 275 / 5e-89 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10018449 [exp] 268 / 2e-85 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 253 / 1e-79 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10020627 [exp] 67 / 6e-12 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10011198 [exp] 61 / 2e-11 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10004862 [exp] 58 / 5e-09 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074200 [exp] 345 / 6e-115 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 341 / 8e-114 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 275 / 1e-88 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 68 / 2e-12 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10021322 pacid=23178303 polypeptide=Lus10021322 locus=Lus10021322.g ID=Lus10021322.BGIv1.0 annot-version=v1.0 ATGGAGGACAACGGCGTCCTCTCCGACTCCGTTCGTAAACCCACAATGCAAAACATCAAAGTGCAAACCTCGAGCGCTGGATCATCATCAGTAACAAAAC CGCCCCCGCCGGCCAAAACCTACTCCCGCAGAGGCCGTCCTCCGGGGACAGTGAACCTCCGTGCACCCCGCAAAAGAATCCCCGTCCCTACATCCTCCTA CACACACCTCGTCCAGCTCAAACAGAAACTCCGTCTCTCCTCTTTTGCCGACACCGTCCACTGGCTCCTCCACCGGATCCGACCCGATCTCATCCCTCTC GGACCCGCCCCCAAGCCCGACCGCAACCGGTCCGATCGTCTCGGTCCGGGACCCGTCTGCATGCCTCTCGGATCCCGGGTCGGAGTCGCACCCGTCAGGG CAACCGTTGTTCAAGCCACTTCTCTGTTTTGCGACACTCCCGCAACTTTAGATAAAGCAGAGAAGCTGACCGCCATCGCTTCTGCTTACGGGTCACATCT GGTAGTGTTTCCTGAAGCGTTCGTTGGTGGTTATCCATGGTGCATGTCCTCTAATTCTGCAGCAAAGAACTTCGAAATGATGGTCAAATATTGCTCCTCT GCCATTACAGTGCCTGGTCCAGAGTTTGAGAGGCTACAGAGGATTGCTTCCAGAAATAGAGTGTACTTGGTGATGGGATTGGTTGAGAGATGTGAGAATT TCCTGTTCAGTACAGTAGTGTTCATAGATCCCTTAGGACGGCTTCTGGGTCGGCAAAGGAAGTTGATCCCACTGCCATCAGAATCTGGAATATGGTGTTC TGGTGGCAAATCATCGTCGCTTCCATTGTTTCGAACTCTTTTCGGGAGTATCGGTGGGCTAATCTCTTGGGACAGCAAGTTACCACTCTTAAGAAGTGAA CTTTATGCTAAAGGGATCGAGATATATTGTGCACCCACAGCGGACTCGAGGAGACAATGGAAGTCTACAGGGATGCATATCGCGGTAGAAGGTAACTGCT TTGTTCTCTCGGCTAACCAGTTCAGGCGAAGGAACGATTACCCGCTAGCAGATGGGGATGGAGATGGCAATGCAAGTGAAATCATATCATCTGGAGGTAG TTTCATTGCATCCCCATCAGGGAAATTCTTGTCAGAGCCTAATCACGAAGGAGAGTGCCTCATCTCAGCTGATCTTGGTAACGAATCAAAGTTCCCCTCT GTTCTATTTTCGTTTAGCTTGTCAACGTTACATACCATTGAGACTCACCATTTGTACGTCTTGATATTGGCAGACTTTCAGGAGATCACTCGGGCGAAGA GGCACCGCATCAGATTTGGAGAATACATTCAGCAGGCAAACCAGGCACGTCGGCAAAGTTTCATCTGCAGCAGACATGCTTAG
AA sequence Show only first row Show all	>Lus10021322 pacid=23178303 polypeptide=Lus10021322 locus=Lus10021322.g ID=Lus10021322.BGIv1.0 annot-version=v1.0 MEDNGVLSDSVRKPTMQNIKVQTSSAGSSSVTKPPPPAKTYSRRGRPPGTVNLRAPRKRIPVPTSSYTHLVQLKQKLRLSSFADTVHWLLHRIRPDLIPL GPAPKPDRNRSDRLGPGPVCMPLGSRVGVAPVRATVVQATSLFCDTPATLDKAEKLTAIASAYGSHLVVFPEAFVGGYPWCMSSNSAAKNFEMMVKYCSS AITVPGPEFERLQRIASRNRVYLVMGLVERCENFLFSTVVFIDPLGRLLGRQRKLIPLPSESGIWCSGGKSSSLPLFRTLFGSIGGLISWDSKLPLLRSE LYAKGIEIYCAPTADSRRQWKSTGMHIAVEGNCFVLSANQFRRRNDYPLADGDGDGNASEIISSGGSFIASPSGKFLSEPNHEGECLISADLGNESKFPS VLFSFSLSTLHTIETHHLYVLILADFQEITRAKRHRIRFGEYIQQANQARRQSFICSRHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10021322 [exp]	0	1
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	2.8	0.8683
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	7.1	0.8863
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	16.5	0.8743
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	17.4	0.8722
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019274 [exp]	18.1	0.8588
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	23.4	0.8595
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	23.9	0.8397
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	25.4	0.8647
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	34.7	0.8373
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	34.9	0.8458

Compare expression of checked genes

Lus10021322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.