Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20690 257 / 2e-85 lumazine-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017000 [exp] 521 / 0 AT2G20690 282 / 2e-95 lumazine-binding family protein (.1) Lus10039826 [exp] 0 / 1 AT2G20690 239 / 4e-78 lumazine-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100500 [exp] 285 / 4e-96 AT2G20690 325 / 1e-112 lumazine-binding family protein (.1) Potri.013G131800 [exp] 281 / 8e-95 AT2G20690 323 / 1e-111 lumazine-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00677 [flax] [poplar] Lum_binding Lumazine binding domain
Representative CDS sequence Show only first row Show all	>Lus10021323 pacid=23178189 polypeptide=Lus10021323 locus=Lus10021323.g ID=Lus10021323.BGIv1.0 annot-version=v1.0 ATGGCCCTCCGATCCTCTCTCACAGCTCCGGTCAATTCACTGGCAATCGCCTCCGGGAGAAACCGATACCCACCAAAAACCACAAACACAGCACTCAATT TCTCACCCATCACCACCCCACACCTCAAATCCACACCTTCCTCCTTATTCATTAATCCAATCCCAATCTCCAGATCCAACCACCAGCAGCAGCCACCACG ATTCGCCACAACAATCACCTGCCTCTTCACTGGAATCGTGGAAGAGATCGGCGAAGTCAAGCGCCTGGGCACTACCTCCGACGGTAGCGGCTACGATCTC AAGATCCGAGCGAAAACCGTCCTGGGCGGAGTAAACCTAGGAGATAGCATCGCTGTTAACGGAACCTGCCTAACGGTGACGGAGTTCACGGAAAACGAAT TCACTACCGGAGTATCTCCCGAGACTCTGAGGAAGACGTCGCTGGCGGGTCTCCAGCCCGGGTCGCGGGTCAATCTGGAGCGGGCGGTCCAGCCCACGAC CCGGATGGGGGGCCATTTCGTGCAGGGACACGTGGATTGTACGGGGGAGATTCTGAGCAAAGAGAAAGAAGGGGATTCTCTGTGGATCAAAGTGGAGGTA GAGAAAGAAGGGGATTCGCTGTGGATCAAAGTGGAGGTTGGGGACCGGAAGGTATTGAGGTACATTGTGCCGAAAGGGTTCATCGCCGTGGATGGGACGA GTTTGACGGTGGTGGATGTGGATGAAGAAGGTGGGTGGTTTAATTTCATGTTGGTGGCTTACACGCAGGGAGAGGTTGTGATTCCGGGGAAGGAGGTTGG CGAGAAGGTGAATTTGGAGGTTGATATATTGGGGAAGTATGTTGAGAGGCTTCTTAGCTGTGGGGTTGTTGAATCCATGGCGTTGAAGAAGAATTCGGAT TTGTGA
AA sequence Show only first row Show all	>Lus10021323 pacid=23178189 polypeptide=Lus10021323 locus=Lus10021323.g ID=Lus10021323.BGIv1.0 annot-version=v1.0 MALRSSLTAPVNSLAIASGRNRYPPKTTNTALNFSPITTPHLKSTPSSLFINPIPISRSNHQQQPPRFATTITCLFTGIVEEIGEVKRLGTTSDGSGYDL KIRAKTVLGGVNLGDSIAVNGTCLTVTEFTENEFTTGVSPETLRKTSLAGLQPGSRVNLERAVQPTTRMGGHFVQGHVDCTGEILSKEKEGDSLWIKVEV EKEGDSLWIKVEVGDRKVLRYIVPKGFIAVDGTSLTVVDVDEEGGWFNFMLVAYTQGEVVIPGKEVGEKVNLEVDILGKYVERLLSCGVVESMALKKNSD L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	0	1
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	2.0	0.8486
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	8.6	0.8455
AT1G42960			unknown protein		Lus10016034 [exp]	9.2	0.7797
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	9.5	0.8283
AT5G44060			unknown protein		Lus10003619 [exp]	11.3	0.8294
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	14.8	0.8305
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	16.0	0.8105
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	18.7	0.8171
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	19.0	0.8143
AT5G58020			unknown protein		Lus10035833 [exp]	19.2	0.8240

Compare expression of checked genes

Lus10021323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.